mRNA_H-elongata_contig20608.5892.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A6H5JYR9_9PHAE (A protein ( P-DTprotein, P-DH protein ) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYR9_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 1.640e-143 Identity = 219/287 (76.31%), Postives = 243/287 (84.67%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGKMEGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVS-----SEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLEAHTKSNGNG 846
VAR EV+YAV+PIENSLGGSIHANYDLLLRYELY++GEHDFRVEHCLLA PGTK DVKKVMSHPQALAQCDNYLRG+ VEKV YDTAGSAK+I+EGKMEGCAAIASDLAAEA+ M+V+ASNIEDDD+NFTRFLLLAR VG FL+P V +KTS+VFTL N+ GALYKALACFSLREID SKIESRPTSAQLLQYLRFQ++ +G V S E RFQYCFYLDFL+GELD A+ AL+HLRE PFC++LGSYAR S LVGPISDTLEA + GNG
Sbjct: 130 VARREVEYAVIPIENSLGGSIHANYDLLLRYELYVIGEHDFRVEHCLLALPGTKREDVKKVMSHPQALAQCDNYLRGMNVEKVAMYDTAGSAKLIAEGKMEGCAAIASDLAAEAYGMEVLASNIEDDDMNFTRFLLLARTPVGGFLSPGVAAKTSIVFTLPNSAGALYKALACFSLREIDFSKIESRPTSAQLLQYLRFQQTTGAGGVGAGGALSNNRSNGEERRFQYCFYLDFLAGELDDKAQSALAHLRESAPFCRVLGSYARDSTLVGPISDTLEALSMGIGNG 416
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A835YRB8_9STRA (Trifunctional chorismate Mutase/Prephenate Dehydratase/Prephenate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRB8_9STRA) HSP 1 Score: 394 bits (1012), Expect = 3.800e-130 Identity = 193/275 (70.18%), Postives = 230/275 (83.64%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGL-GVEKVPTYDTAGSAKIISEGKMEGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLEA 822
V+ E DYAV+PIENSLGGSIHANYDLLLR+EL+I+GEHDF+VEH L+A PGTK +++K+V+SH QALAQCDNYLR + GVE+VPTYDTAGSAK+I+E M+GCAAIAS+LAAE + ++V+A+NIEDD VNFTRFLLLARQ VG F+ P VP+KTSVVFTL NT GALYKALACFSLR+ID SKIESRPTSAQLLQYLR+Q + +LPRFQYCFYLDFL+ ELD AA+ AL+HLRE+ PF ++LGSY R +LVGP+ DTLEA
Sbjct: 51 VSNREADYAVIPIENSLGGSIHANYDLLLRFELFIIGEHDFKVEHSLMALPGTKASEIKQVLSHQQALAQCDNYLRAMPGVERVPTYDTAGSAKMIAEKGMKGCAAIASELAAETYGLEVLATNIEDDHVNFTRFLLLARQPVGVFIAPPVPAKTSVVFTLPNTAGALYKALACFSLRDIDFSKIESRPTSAQLLQYLRYQLRSSGSGAGXXXGGSDDLPRFQYCFYLDFLAAELDDAAQSALAHLREVAPFMRVLGSYPRQGQLVGPVRDTLEA 325
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A1Z5KR40_FISSO (Arogenate/prephenate dehydratase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR40_FISSO) HSP 1 Score: 340 bits (872), Expect = 2.470e-108 Identity = 174/280 (62.14%), Postives = 211/280 (75.36%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGKM-------EGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLE 819
VA E DYA LP+ENSLGGSIH NYDL+LRY+L IV EH+FRV+HCLLA+ G K D+K +SHPQALAQCDN+LRGLG+ +PTYDTAGSAK+I++G E AAIAS LA + + M+ + IEDDD NFTRFLLL RQ VGA++T ++P+KTSVVFTL NT GALYKALACFSLR+ID SKIESRPTSA LL +L+F KS G + K D LPRF+YCFYLDFL+ ELD + AL+HLRE F +ILGS+ R S+LVGP+ + +
Sbjct: 102 VASMECDYACLPVENSLGGSIHENYDLMLRYDLTIVAEHEFRVKHCLLAKEGVKREDIKYAISHPQALAQCDNFLRGLGITPIPTYDTAGSAKMIADGGQLPDKCTPENTAAIASALAGKIYGMNCLNEGIEDDDTNFTRFLLLGRQGVGAYITKNIPAKTSVVFTLPNTAGALYKALACFSLRDIDFSKIESRPTSASLLNFLKF-KSQQLGRKARNKAD---LPRFRYCFYLDFLANELDENTQNALAHLREQADFMRILGSFPRKSRLVGPVKEAAD 377
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A7S1ZAS6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAS6_TRICV) HSP 1 Score: 336 bits (862), Expect = 4.320e-107 Identity = 168/281 (59.79%), Postives = 210/281 (74.73%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGK--MEGC-----AAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLEA 822
VA EVDY LP+ENSLGGSIH NYDL+LRY+L +V EH+FRV+HCLLA+PG K ++K +SHPQALAQCDNYLRGLG+ +P YDTAGSAK+I + K +GC AAIASDLA + ++ + IEDDD NFTRFLLL R V +L ++PSKTS+VFTL +T GALYKALACF+LR+ID SKIESRPTSA LL +L+F+ A + ++ + E RF+YCFYLDFL+ ELD +A+ AL+HLRE FC++LGSY S+LVGP+ D EA
Sbjct: 84 VASREVDYCCLPVENSLGGSIHENYDLMLRYDLTVVAEHEFRVKHCLLAKPGIKREEIKFAISHPQALAQCDNYLRGLGIAPIPVYDTAGSAKMIRDNKGLPDGCTPQNTAAIASDLAGRTYCLNCLDEGIEDDDTNFTRFLLLGRNGVSQYLGKNIPSKTSIVFTLPDTAGALYKALACFALRDIDFSKIESRPTSASLLSFLKFRSQA----MGRKRRNRAEQTRFRYCFYLDFLASELDESAQYALAHLREQADFCRVLGSYPAKSRLVGPVKDAAEA 360
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: W7U342_9STRA (Arogenate dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U342_9STRA) HSP 1 Score: 335 bits (860), Expect = 1.530e-106 Identity = 169/286 (59.09%), Postives = 213/286 (74.48%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGKMEGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQ----KSADSGNVSSE--KDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLEAHTKSNG 840
VA E DYAV+PIENSLGGSIHANYDLLLR+EL+I+GEH+FRVEH LLA PG K D+++VMSHPQALAQCD YLR GV + YDTAGSAK+I+E + CAAIAS+LA + +DV+ NIEDDD NFTRFLLL+RQS+ + + VP+KTS+VF NTPGALYKALACF+LR+ID KIESRPTS QL ++L+FQ +S SG + D+ +LPRF+YCFYLDFL+ +LD AR AL L E + + ++LGS+ +L+GPI + L+ K +G
Sbjct: 112 VATREADYAVVPIENSLGGSIHANYDLLLRHELHIIGEHEFRVEHSLLALPGVKKEDIRRVMSHPQALAQCDAYLRNWGVARESMYDTAGSAKVIAEQGLRDCAAIASELAGATYGLDVLDQNIEDDDSNFTRFLLLSRQSISSLIPHSVPAKTSIVFITPNTPGALYKALACFTLRDIDFCKIESRPTSPQLFRFLQFQQRQMRSFASGGADAAMGSGDDHDLPRFRYCFYLDFLASQLDEPARNALLQLEEQSQYVRVLGSFPTKGQLLGPIREALDLLAKESG 397
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A1E7F413_9STRA (Prephenate dehydratase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F413_9STRA) HSP 1 Score: 312 bits (799), Expect = 4.780e-103 Identity = 167/281 (59.43%), Postives = 197/281 (70.11%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQP------GTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGKME-GCA-----AIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSG---------NVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYAR 780
VA EVDY LPIENSLGGSIH NYDL+LRY+L I EH+FRV+HC+LA P G +K +SHPQALAQCDNYLR L + +PTYDTAGSAK+I + + GC AIASDLA E + M+ +A +EDDD NFTRFLLL R+ V +L DVPSKTSVVFTL NT GALYKALACFSLR+ID SKIESRPTSA LL YL+F+K+A+S + +LPRF+YCFYLDFL G+L + ALS+LRE T F +ILGSY R
Sbjct: 40 VASMEVDYCCLPIENSLGGSIHENYDLMLRYDLTICAEHEFRVQHCVLASPDASSILGGSGQQIKYAISHPQALAQCDNYLRSLNIRPIPTYDTAGSAKMIRDNDLPAGCTPFNTIAIASDLAGETYGMNCLAKGVEDDDSNFTRFLLLGRKGVLEYLNKDVPSKTSVVFTLPNTAGALYKALACFSLRDIDFSKIESRPTSAALLNYLKFRKAANSAVAXXXXXXXXXXXXXXXDNDLPRFRYCFYLDFLDGQLSSNSENALSNLREFTDFVRILGSYPR 320
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A7S1FR39_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FR39_9STRA) HSP 1 Score: 320 bits (820), Expect = 7.370e-103 Identity = 169/288 (58.68%), Postives = 210/288 (72.92%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGKME---GC-----AAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLT----PDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERE---LPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLE 819
V E DYA LP+ENSLGGSIH N+DL+LRY+L +V EHD RV H LL++ I +K +SHPQALAQCDNYLR + +P YDTAG+AK+++EG ++ GC AAIASDLAA+ + +D++ + IEDDD NFTRFLLL RQ VG LT DVP+KTSVVFTL NTPGALYKALACFSLR+ID SKIESRPTSA LLQ+L+F+ S K+D R +PRF+YCFYLDFL+ E++ A+ AL HLRE + FC+ILGSY + S+LVGP+ +E
Sbjct: 21 VVNRECDYACLPVENSLGGSIHENFDLMLRYDLVVVAEHDLRVSHNLLSKQ-KDINKIKYAISHPQALAQCDNYLRSHNITPLPVYDTAGAAKMLAEGSLDLPSGCTKENTAAIASDLAAKTYGLDIVEAAIEDDDSNFTRFLLLGRQGVGCLLTGSDGKDVPAKTSVVFTLPNTPGALYKALACFSLRDIDFSKIESRPTSASLLQFLKFR---------SAKEDSRSGSLIPRFRYCFYLDFLASEMNPQAQNALHHLREQSEFCRILGSYPQKSRLVGPVKAAVE 298
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A7S4VK81_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VK81_9STRA) HSP 1 Score: 325 bits (834), Expect = 1.750e-102 Identity = 164/286 (57.34%), Postives = 207/286 (72.38%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEG-------KMEGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLEAHTKSN 837
VA E DYA +P+ENSLGGSIH NYDL+LRY+L +V EH+FRV HCLL +PG K + +K +SHPQALAQCDNYLR LG+ VP YDTAGSAKI+SEG E AAIASDLA + + ++ + IEDDDVNFTRFLLL+R + L P +PSKTS+VFTL ++ GALYKALACF+LR+ID SKIESRPT+A LL YL+F+ G + ++ PRF+YCFYLDFL+ E+D ++ AL HL E + + +ILGSY + S+LVGPI+ +E SN
Sbjct: 102 VASRECDYAFVPVENSLGGSIHENYDLMLRYDLSVVAEHEFRVHHCLLVKPGVKKSAIKYAVSHPQALAQCDNYLRSLGITPVPMYDTAGSAKILSEGVGLPDKCTPENTAAIASDLAGKTYRLNCLEKGIEDDDVNFTRFLLLSRTGIVQHLNPKIPSKTSIVFTLPDSAGALYKALACFALRDIDFSKIESRPTAASLLNYLKFRSQQAHGRKARQRSGS---PRFRYCFYLDFLASEVDEISQNALHHLNEQSDYLRILGSYPQKSRLVGPIAAAVEELKNSN 384
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A448ZNM5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNM5_9STRA) HSP 1 Score: 323 bits (828), Expect = 7.980e-102 Identity = 172/292 (58.90%), Postives = 208/292 (71.23%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKK-------------VMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISEGKM------EGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPISDTLE 819
VA EVDY LPIENSLGGSIH NYDL+LRY+L I EH+FRV+HC+LA+ G ++ + K +SHPQALAQCDNYLR LG+ +PTYDTAGSAK+I + + + AIASDLA + M+ +A ++EDDD NFTRFLLL R+ V L DVPSKTSVVFTL NT GALYKALACFSLR+ID SKIESRPTSA LL YL+F+KS + + E DD +LPRF+YCFYLDFL G+L + AL++LRE T F +ILGSY R S+LVGP+S E
Sbjct: 96 VASMEVDYCCLPIENSLGGSIHENYDLMLRYDLTICAEHEFRVQHCVLAKEGVRLPEGKHDXGGDQGGXVARYAISHPQALAQCDNYLRSLGITPIPTYDTAGSAKMIRDNDLPDRCTPDNTIAIASDLAGATYGMNCLAKSVEDDDSNFTRFLLLGRKGVLEHLGKDVPSKTSVVFTLPNTAGALYKALACFSLRDIDFSKIESRPTSAALLNYLKFRKSQQT-SYGGEHDDS-DLPRFRYCFYLDFLDGQLSSNSENALANLREFTDFVRILGSYPRQSRLVGPVSVAAE 385
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Match: A0A7S0CAL8_9STRA (Hypothetical protein n=3 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAL8_9STRA) HSP 1 Score: 318 bits (815), Expect = 1.850e-100 Identity = 170/283 (60.07%), Postives = 200/283 (70.67%), Query Frame = 1
Query: 1 VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQPGTKIADVKKVMSHPQALAQCDNYLRGLGVEKVPTYDTAGSAKIISE-------------GKM--EGCAAIASDLAAEAWNMDVIASNIEDDDVNFTRFLLLARQSVGAFLTPDVPSKTSVVFTLANTPGALYKALACFSLREIDCSKIESRPTSAQLLQYLRFQKSADSGNVSSEKDDERELPRFQYCFYLDFLSGELDYAARCALSHLRELTPFCKILGSYARGSKLVGPI 804
V E DYA +P+ENSLGGSIH NYDL+LRY+L IV EHDFRV HC L +PG K DVK +SH QALAQCD YLRGLG+ VPTYDTAGSAK+I+ GK E AAIASDLA E + +D + IEDDD NFTRFLLL R+ V LT + SKTSVVFTL ++ GALYKALACFSLR+ID SKIESRPTSA LL +L+F +S G + + + PRF+YCFYLDFL+ ELD +A+ AL HLRE FC++LGSY SKLVGP+
Sbjct: 108 VTAMECDYACVPVENSLGGSIHENYDLMLRYDLTIVAEHDFRVRHCFLVKPGMKREDVKYAISHSQALAQCDGYLRGLGITPVPTYDTAGSAKMIANTFNGVTDGARALPGKCTPENTAAIASDLAGEIFGLDSLDKGIEDDDSNFTRFLLLGRKGVVEHLTKKISSKTSVVFTLPDSAGALYKALACFSLRDIDFSKIESRPTSASLLHFLKF-RSQIGGRTALSRS---KSPRFRYCFYLDFLASELDESAQNALHHLREQADFCRVLGSYPEKSKLVGPV 386 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20608.5892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20608.5892.1 >prot_H-elongata_contig20608.5892.1 ID=prot_H-elongata_contig20608.5892.1|Name=mRNA_H-elongata_contig20608.5892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp VARHEVDYAVLPIENSLGGSIHANYDLLLRYELYIVGEHDFRVEHCLLAQback to top mRNA from alignment at H-elongata_contig20608:2834..6552+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20608.5892.1 ID=mRNA_H-elongata_contig20608.5892.1|Name=mRNA_H-elongata_contig20608.5892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3719bp|location=Sequence derived from alignment at H-elongata_contig20608:2834..6552+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20608:2834..6552+ >mRNA_H-elongata_contig20608.5892.1 ID=mRNA_H-elongata_contig20608.5892.1|Name=mRNA_H-elongata_contig20608.5892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig20608:2834..6552+ (Himanthalia elongata Himel1 dioecious)back to top |