mRNA_H-elongata_contig206031.5888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206031.5888.1
Unique NamemRNA_H-elongata_contig206031.5888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: D7G3L9_ECTSI (Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L9_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 4.850e-66
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 EEYEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIFD 411
            EEYE +MKLNVVRPV VTGV+RT MGTFLV+TDCLLGG+  RWEAR VISAAG+H SP WPRLPG ETF+G QIHSSQYR A+DFRG +VAVVGSGNSGAQILAEVS PG+A+STLWST   PSFLP+G SGK+IFD
Sbjct:  156 EEYESVMKLNVVRPVNVTGVSRTPMGTFLVETDCLLGGTVARWEARTVISAAGTHASPVWPRLPGWETFRGTQIHSSQYRFADDFRGKKVAVVGSGNSGAQILAEVSAPGVASSTLWSTLTAPSFLPMGLSGKEIFD 292          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: A0A1T5NLG5_9BACT (Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD n=2 Tax=Chitinophagaceae TaxID=563835 RepID=A0A1T5NLG5_9BACT)

HSP 1 Score: 114 bits (285), Expect = 8.390e-28
Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    1 EEYEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIFD 411
            +EYE   K  V RPV VT V +    TF++ T      +   + A+A++SA GS+ +P  P +PG+ +FKG  +HSSQYR  EDF G RVA+VG GNSGAQILAEVS+    AS LW T + P FLP    GK +FD
Sbjct:   88 QEYELRYKFPVARPVKVTSVVKKE-DTFVLTT------TAGYYYAKAIVSATGSYANPFIPDIPGSASFKGTVLHSSQYREPEDFSGKRVAIVGEGNSGAQILAEVSK---VASALWITRQPPEFLPDDIDGKYLFD 214          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: A0A069I6L1_9BURK (Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Cupriavidus sp. SK-3 TaxID=1470558 RepID=A0A069I6L1_9BURK)

HSP 1 Score: 114 bits (284), Expect = 1.140e-27
Identity = 71/134 (52.99%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    7 YEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIF 408
            YEE   L V RPVVV  V R      +V TD    GS   + ARAV+SA G+ + P WP  PGA  F GVQ+HS+ YRSA+ F G RV VVG GNSGAQILAEVSQ    A T+W+T E P FLP    G+ +F
Sbjct:   86 YEERYALPVKRPVVVQSVARDGER-MIVQTD---SGS---YAARAVVSATGTWRHPFWPHYPGAADFHGVQLHSAHYRSADAFAGKRVLVVGGGNSGAQILAEVSQ---VADTVWATKEPPLFLPDDVDGRVLF 209          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: A0A246FI62_9BACT (Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Hymenobacter TaxID=89966 RepID=A0A246FI62_9BACT)

HSP 1 Score: 112 bits (281), Expect = 3.790e-27
Identity = 67/140 (47.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    4 EYEEIMKLNVVRPVVVTGVTRTT-----MGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIF 408
            +YE+  +L V RPV V  V R++     +G+F+V+TD         ++ARAV+ A GS ++P  P+ PG   F GVQ+HS+QY+ A  F G RV VVGSGNSGAQ+LAEVSQ    A T W T EEP FLP    G+ +F
Sbjct:   93 QYEQRYELPVRRPVRVAAVRRSSSLSGSVGSFVVETDA------GTYQARAVVCATGSWRNPIVPQFPGQADFGGVQLHSAQYKQAAPFAGQRVLVVGSGNSGAQVLAEVSQ---VARTTWVTQEEPRFLPDDVDGRVLF 223          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: UPI00159FD376 (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Hymenobacter terrestris TaxID=2748310 RepID=UPI00159FD376)

HSP 1 Score: 112 bits (280), Expect = 5.300e-27
Identity = 66/138 (47.83%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 EEYEEIMKLNVVRPVVVTGVTRTT--MGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIF 408
            ++YE+  +L V RPV V  V R++  +G F+V+TD         W+ARAV+ A GS ++P  P  PG   F GVQ+HS+QY+ A  F G RV VVG GNSGAQ+LAEVSQ    A T W T +EP FLP    G+ +F
Sbjct:   92 KQYEQRYELPVRRPVRVAAVRRSSGSVGGFMVETDA------GTWQARAVVCATGSWRNPFVPVYPGQADFSGVQLHSAQYQQAAPFAGQRVLVVGGGNSGAQVLAEVSQ---VAHTTWVTEKEPRFLPDDVDGRVLF 220          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: T5HZ18_RHOER (FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=13 Tax=Nocardiaceae TaxID=85025 RepID=T5HZ18_RHOER)

HSP 1 Score: 110 bits (275), Expect = 3.060e-26
Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    7 YEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIFD 411
            YE    L V RPV VT VTR+  G +LV++D       + W ARAV++  G+ + P WP  PG   F G QIH++ YRS   F G++VAVVG GNS AQI+AEVS     A TLW TS EP FLP    G+ +FD
Sbjct:  103 YETRYDLPVRRPVRVTSVTRSGDG-YLVESD------HSSWFARAVVNTTGTWRQPFWPIYPGIREFTGTQIHTTSYRSPTPFAGSKVAVVGGGNSAAQIVAEVST---VAETLWLTSREPRFLPDDVDGRILFD 227          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: A0A373FQ04_COMTE (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Comamonas TaxID=283 RepID=A0A373FQ04_COMTE)

HSP 1 Score: 110 bits (274), Expect = 3.110e-26
Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    4 EYEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIFD 411
            +YE   + N+ RPV VTG+  T    F V+     GG   RW ARAV+ A G+ ++P  P + GA +FKG Q+HS+QY S+E F+G RV VVG GNSGAQILAEVS   +A ST W T E P+FLP    G+ +F+
Sbjct:   84 KYEARYQFNIERPVRVTGIESTEQ-VFQVNA----GG--RRWYARAVVLATGTWRNPFVPEVEGAASFKGQQLHSAQYVSSEPFKGKRVMVVGGGNSGAQILAEVSL--VAQSTTWVTLEPPAFLPDEVDGRVLFE 210          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: I6R3V7_RHIRD (FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=6 Tax=Hyphomicrobiales TaxID=356 RepID=I6R3V7_RHIRD)

HSP 1 Score: 109 bits (273), Expect = 4.210e-26
Identity = 67/134 (50.00%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    7 YEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIF 408
            YEE  K  + RP+VVT V R+  GT  V  D        RW+ARAV+S  G+ + P  P  PGA  FKG QIHS+ Y SA++F G RVA+VG GNSGAQILAEVS     A T+W T + P FLP    G  +F
Sbjct:   88 YEERYKFPIERPMVVTSV-RSVDGTLEVIAD------KGRWQARAVLSTTGTWRHPFIPAYPGAADFKGQQIHSANYVSADEFAGQRVAIVGGGNSGAQILAEVST---VAKTVWVTPQPPIFLPDDVDGHVLF 211          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: UPI0005FBA2B2 (ArsO family NAD(P)H-dependent flavin-containing monooxygenase n=1 Tax=Pseudomonas TaxID=286 RepID=UPI0005FBA2B2)

HSP 1 Score: 109 bits (273), Expect = 5.040e-26
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    4 EYEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIFD 411
            +YE      +VRPV V  V RT  G  +   D         WEARA+ISA GS  +P  P  PGA  F GVQ+HS+ Y+S E FRG RV VVG GNSGAQI AEVS+    A + W T EEP+FLP    G+ +F+
Sbjct:   88 QYEGRYDFPIVRPVHVIAVERTHRGMRVRAND-------REWEARAIISATGSWGNPYLPAYPGAALFNGVQVHSAHYQSPETFRGLRVLVVGGGNSGAQIHAEVSE---VADSTWVTLEEPAFLPDEVDGRVLFE 213          
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Match: A0A5A7MFQ0_COMTE (Monooxygenase n=24 Tax=Comamonas TaxID=283 RepID=A0A5A7MFQ0_COMTE)

HSP 1 Score: 109 bits (272), Expect = 6.350e-26
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    4 EYEEIMKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHKSPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEVSQPGIAASTLWSTSEEPSFLPVGFSGKDIFD 411
            +YEE  +L + RPV VTG+  T  G F V+           W++RAV+ A G+ ++P  P + G  +FKG Q+HS+QY S E F+G RV VVG GNSGAQILAEVS   +A ST W T E P+FLP    G+ +F+
Sbjct:   84 KYEERYELKIERPVRVTGIESTEQG-FQVN------AGARSWQSRAVVFATGTWRNPFVPNVEGLTSFKGQQLHSAQYVSPEPFKGKRVMVVGGGNSGAQILAEVSL--VAQSTTWVTLEPPAFLPDEVDGRVLFE 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206031.5888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3L9_ECTSI4.850e-6678.83Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1T5NLG5_9BACT8.390e-2848.91Predicted flavoprotein CzcO associated with the ca... [more]
A0A069I6L1_9BURK1.140e-2752.99Pyridine nucleotide-disulfide oxidoreductase n=1 T... [more]
A0A246FI62_9BACT3.790e-2747.86Pyridine nucleotide-disulfide oxidoreductase n=2 T... [more]
UPI00159FD3765.300e-2747.83NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Hymeno... [more]
T5HZ18_RHOER3.060e-2648.89FAD-dependent pyridine nucleotide-disulfide oxidor... [more]
A0A373FQ04_COMTE3.110e-2649.26NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Comamo... [more]
I6R3V7_RHIRD4.210e-2650.00FAD-dependent pyridine nucleotide-disulfide oxidor... [more]
UPI0005FBA2B25.040e-2648.53ArsO family NAD(P)H-dependent flavin-containing mo... [more]
A0A5A7MFQ0_COMTE6.350e-2647.06Monooxygenase n=24 Tax=Comamonas TaxID=283 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206031contigH-elongata_contig206031:2..832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue5.5e-52
Seed eggNOG ortholog2880.D7G3L9
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD-dependent pyridine nucleotide-disulphide oxidoreductase
Ec32 orthologEc-07_000710.1
Exons2
Model size414
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206031.5888.1prot_H-elongata_contig206031.5888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206031 20..832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.2197332-UTR-H-elongata_contig206031:1..191622930153.2197332-UTR-H-elongata_contig206031:1..19Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206031 2..19 +
1691679301.4858336-UTR-H-elongata_contig206031:1..191691679301.4858336-UTR-H-elongata_contig206031:1..19Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig206031 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.2350047-CDS-H-elongata_contig206031:19..1521622930153.2350047-CDS-H-elongata_contig206031:19..152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206031 20..152 +
1691679301.502074-CDS-H-elongata_contig206031:19..1521691679301.502074-CDS-H-elongata_contig206031:19..152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206031 20..152 +
1622930153.248378-CDS-H-elongata_contig206031:569..8321622930153.248378-CDS-H-elongata_contig206031:569..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206031 570..832 +
1691679301.5114105-CDS-H-elongata_contig206031:569..8321691679301.5114105-CDS-H-elongata_contig206031:569..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206031 570..832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206031.5888.1

>prot_H-elongata_contig206031.5888.1 ID=prot_H-elongata_contig206031.5888.1|Name=mRNA_H-elongata_contig206031.5888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MKLNVVRPVVVTGVTRTTMGTFLVDTDCLLGGSPNRWEARAVISAAGSHK
SPDWPRLPGAETFKGVQIHSSQYRSAEDFRGARVAVVGSGNSGAQILAEV
SQPGIAASTLWSTSEEPSFLPVGFSGKDIFDS
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mRNA from alignment at H-elongata_contig206031:2..832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206031.5888.1 ID=mRNA_H-elongata_contig206031.5888.1|Name=mRNA_H-elongata_contig206031.5888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=831bp|location=Sequence derived from alignment at H-elongata_contig206031:2..832+ (Himanthalia elongata Himel1 dioecious)
GAAGAGTACGAAGAAATAATGAAGCTCAACGTAGTGCGCCCCGTGGTGGT TACGGGGGTCACAAGAACGACGATGGGAACGTTCCTCGTGGATACCGACT GCCTACTAGGGGGAAGCCCCAACCGCTGGGAGGCGCGAGCCGTCATCAGC GGTGAGATAACATTTTGTATTTTTTCAAACAGAAGCAGGAGATGTTATGA CGAAGAGTAAAGGGGAAACCTGCGTCCAGAGCGCATGTCAAAGGGTTTCT AAAGAGAATCGAGGCAGGCCCTTCTAGGGGAAATGGTTACATATTCAAAT ATTGAAGTTGCAGTGGTCCGCCGCATCACGAGCTCAGTCACACTCCCAAA CGCTTGTGTGCACGATTACTAATACTAGCCATAATTCTAAGATCGCTGTA CTGTATTGGACACGCCTATCCCCCTGGTTTTCCTGTGAGTCACTGATTTT GTTTTTCATGTGGACTAGATTATTTCGGTAGTAAACTATTAACGTGCTAC ATATGTTTTTCGTTTTTGACGTGTTTTTGCCTCTCGGGTGTTTATATCCC TCTTTAATATAAAAATAGCCGCTGGGTCCCACAAGTCCCCGGACTGGCCA CGCCTCCCCGGCGCGGAAACCTTCAAGGGCGTCCAAATCCACAGCAGTCA GTACCGCTCCGCCGAAGACTTCAGGGGCGCCAGGGTAGCCGTCGTCGGTT CCGGGAACAGCGGCGCGCAGATACTCGCCGAAGTATCTCAGCCGGGTATC GCCGCATCGACGCTGTGGTCAACCTCAGAGGAGCCGTCTTTTTTGCCTGT AGGGTTTTCTGGAAAGGATATTTTCGACTCC
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Coding sequence (CDS) from alignment at H-elongata_contig206031:2..832+

>mRNA_H-elongata_contig206031.5888.1 ID=mRNA_H-elongata_contig206031.5888.1|Name=mRNA_H-elongata_contig206031.5888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig206031:2..832+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTCAACGTAGTGCGCCCCGTGGTGGTTACGGGGGTCACAAGAAC
GACGATGGGAACGTTCCTCGTGGATACCGACTGCCTACTAGGGGGAAGCC
CCAACCGCTGGGAGGCGCGAGCCGTCATCAGCGATGAAGCTCAACGTAGT
GCGCCCCGTGGTGGTTACGGGGGTCACAAGAACGACGATGGGAACGTTCC
TCGTGGATACCGACTGCCTACTAGGGGGAAGCCCCAACCGCTGGGAGGCG
CGAGCCGTCATCAGCGCCGCTGGGTCCCACAAGTCCCCGGACTGGCCACG
CCTCCCCGGCGCGGAAACCTTCAAGGGCGTCCAAATCCACAGCAGTCAGT
ACCGCTCCGCCGAAGACTTCAGGGGCGCCAGGGTAGCCGTCGTCGGTTCC
GGGAACAGCGGCGCGCAGATACTCGCCGAAGTATCTCAGCCGGGTATCGC
CGCATCGACGCTGTGGTCAACCTCAGAGGAGCCGTCTTTTTTGCCTGTAG
GGTTTTCTGGAAAGGATATTTTCGACTCCCCGCTGGGTCCCACAAGTCCC
CGGACTGGCCACGCCTCCCCGGCGCGGAAACCTTCAAGGGCGTCCAAATC
CACAGCAGTCAGTACCGCTCCGCCGAAGACTTCAGGGGCGCCAGGGTAGC
CGTCGTCGGTTCCGGGAACAGCGGCGCGCAGATACTCGCCGAAGTATCTC
AGCCGGGTATCGCCGCATCGACGCTGTGGTCAACCTCAGAGGAGCCGTCT
TTTTTGCCTGTAGGGTTTTCTGGAAAGGATATTTTCGACTCC
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