mRNA_H-elongata_contig205722.5874.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205722.5874.1
Unique NamemRNA_H-elongata_contig205722.5874.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205722.5874.1 vs. uniprot
Match: A0A6H5KMW9_9PHAE (Vacuolar protein sorting-associated protein 35 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMW9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.530e-11
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   19 KAALEEERRLVARVVHLMRNDDTDRYFRMLVVARRHLG 132
            +AA EEERRLVARVVHLMRN+DTD YFRMLVVARRHLG
Sbjct:  485 QAAQEEERRLVARVVHLMRNEDTDCYFRMLVVARRHLG 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205722.5874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMW9_9PHAE1.530e-1189.47Vacuolar protein sorting-associated protein 35 n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205722contigH-elongata_contig205722:641..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D8LQA0
KEGG koko:K18468
KEGG Pathwayko04144,map04144
EggNOG free text desc.negative regulation of late endosome to lysosome transport
EggNOG OGsKOG1107@1,KOG1107@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.0291672-CDS-H-elongata_contig205722:640..7721622930152.0291672-CDS-H-elongata_contig205722:640..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205722 641..772 -
1691679300.9906857-CDS-H-elongata_contig205722:640..7721691679300.9906857-CDS-H-elongata_contig205722:640..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205722 641..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205722.5874.1prot_H-elongata_contig205722.5874.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205722 641..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205722.5874.1

>prot_H-elongata_contig205722.5874.1 ID=prot_H-elongata_contig205722.5874.1|Name=mRNA_H-elongata_contig205722.5874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
ASNSNPKAALEEERRLVARVVHLMRNDDTDRYFRMLVVARRHLG
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mRNA from alignment at H-elongata_contig205722:641..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205722.5874.1 ID=mRNA_H-elongata_contig205722.5874.1|Name=mRNA_H-elongata_contig205722.5874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig205722:641..772- (Himanthalia elongata Himel1 dioecious)
GCTTCCAATTCCAACCCGAAGGCGGCCTTAGAGGAAGAACGGCGCTTGGT
GGCTCGCGTCGTGCATCTCATGAGGAATGACGATACGGATCGTTACTTCC
GCATGCTAGTGGTCGCCAGGAGGCATCTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig205722:641..772-

>mRNA_H-elongata_contig205722.5874.1 ID=mRNA_H-elongata_contig205722.5874.1|Name=mRNA_H-elongata_contig205722.5874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig205722:641..772- (Himanthalia elongata Himel1 dioecious)
GCTTCCAATTCCAACCCGAAGGCGGCCTTAGAGGAAGAACGGCGCTTGGT
GGCTCGCGTCGTGCATCTCATGAGGAATGACGATACGGATCGTTACTTCC
GCATGCTAGTGGTCGCCAGGAGGCATCTGGGGGCTTCCAATTCCAACCCG
AAGGCGGCCTTAGAGGAAGAACGGCGCTTGGTGGCTCGCGTCGTGCATCT
CATGAGGAATGACGATACGGATCGTTACTTCCGCATGCTAGTGGTCGCCA
GGAGGCATCTGGGG
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