prot_H-elongata_contig205722.5874.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig205722.5874.1
Unique Nameprot_H-elongata_contig205722.5874.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length44
Homology
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BLAST of mRNA_H-elongata_contig205722.5874.1 vs. uniprot
Match: A0A6H5KMW9_9PHAE (Vacuolar protein sorting-associated protein 35 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMW9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.530e-11
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 
Query:    7 KAALEEERRLVARVVHLMRNDDTDRYFRMLVVARRHLG 44
            +AA EEERRLVARVVHLMRN+DTD YFRMLVVARRHLG
Sbjct:  485 QAAQEEERRLVARVVHLMRNEDTDCYFRMLVVARRHLG 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205722.5874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMW9_9PHAE1.530e-1189.47Vacuolar protein sorting-associated protein 35 n=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005378Vacuolar protein sorting-associated protein 35PFAMPF03635Vps35coord: 8..43
e-value: 4.3E-5
score: 22.2
IPR042491Vacuolar protein sorting-associated protein 35, C-terminalGENE3D1.25.40.660coord: 9..44
e-value: 1.0E-6
score: 30.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205722contigH-elongata_contig205722:641..772 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205722.5874.1mRNA_H-elongata_contig205722.5874.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig205722 641..772 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig205722.5874.1 ID=prot_H-elongata_contig205722.5874.1|Name=mRNA_H-elongata_contig205722.5874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
ASNSNPKAALEEERRLVARVVHLMRNDDTDRYFRMLVVARRHLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005378Vps35
IPR042491Vps35_C