mRNA_H-elongata_contig205663.5869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205663.5869.1
Unique NamemRNA_H-elongata_contig205663.5869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A835YSQ9_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.840e-24
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRAS 264
            R SS  E  RG+ AT+RS DGAHAL  E+  RD+ PRRHP VPYA+AASL V+ ++RPSV+SSM+Y++T D RD P+VP++G + +AS
Sbjct:  167 RTSSFTELSRGLVATLRSHDGAHALTGEMTWRDVMPRRHPTVPYAHAASLSVLRESRPSVRSSMRYAYTQDGRDSPYVPTVGPYLQAS 254
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BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: W4GV81_9STRA (Omp85 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GV81_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.580e-18
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T +V   +G H LA  +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY++ DD R+DP +P+ G   RAS E AG
Sbjct:  169 RFSSFREKFRGGTVSVSDYNGVHDLAFNLGWRDIVPVRNKKIPNTYAASPSIMAEAVPSTKSSVKYTYNDDQRNDPTLPTSGRLLRASAEVAG 261
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BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A6G0XGW8_9STRA (POTRA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGW8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.320e-17
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T +V   DG H LA  +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY++ DD R+D  +P+ G   RAS E AG
Sbjct:  166 RFSSYREKFRGGTVSVSDYDGVHDLAFNLGWRDIVPVRNKKIPNTYAASPSIMAEAVPSTKSSIKYTYNDDQRNDSTLPTAGRLLRASTEVAG 258
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BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A024UXL9_9STRA (Omp85 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXL9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.560e-16
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T ++   +G H LA  +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY+F DD R+D  +P+ G   R S E AG
Sbjct:  169 RFSSFREKFRGGTVSISDYNGVHDLAFNLGWRDIVPVRNKKIPNTYAASPSIMAEAVPSTKSSVKYTFNDDQRNDSTLPTSGRLLRVSAEVAG 261
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BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A067BSA8_SAPPC (POTRA domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSA8_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 5.520e-16
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T ++   +  H LAL +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY + DD R+D  +P+ G   R S+E AG
Sbjct:  165 RFSSYHERFRGGTVSLTDDESRHELALNLGWRDIVPVRNKKIPSTYAASPSIMAEAEPSTKSSIKYVYNDDQRNDAALPTAGRLLRTSMEVAG 257
[Close]
BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: W7U1Z2_9STRA (Sorting and assembly machinery component 50 putative n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Z2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.410e-16
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            R SSL E  + V   + + +  H L+ E+ LRDI PRRH   P+AY ASL ++ +A PS+KS  +Y FTDD +DD  +PS G+FF   +E AG
Sbjct:  163 RTSSLSEKVQAVAFHLTTHNRRHRLSYELALRDILPRRHLSTPFAYDASLSIMREATPSLKSVFRYKFTDDRQDDSVLPSSGTFFSGLLELAG 255
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BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A485LIX1_9STRA (Aste57867_21946 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIX1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.590e-16
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T +V   +G H LA  +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY++ DD R++  +P+ G   RAS E AG
Sbjct:  168 RFSSYREKFRGGTVSVSDYNGVHDLAFNLGWRDIVPVRNKKIPNTYAASPGIMAEAVPSTKSSIKYTYNDDQRNNSTLPTTGRLLRASAEVAG 260
[Close]
BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: F0W4E7_9STRA (Sorting and assembly machinery component 50 putativ n=10 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4E7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.620e-15
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    4 FSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            FSS  E  RG    +    G H L+L  G RDI P+R   +P  + AS  ++A A+PSVK+S+KYSF DD RDDP +P  GS    S E AG
Sbjct: 1379 FSSYSEKVRGALVALCDEFGRHELSLHCGWRDIIPKRDKTIPTIFHASPSILAQAQPSVKTSVKYSFNDDDRDDPMLPCFGSLLHCSTEIAG 1470
[Close]
BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A1V9ZWW2_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWW2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.620e-15
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T ++   +  H LA  +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY + DD R+D  +P+ G   R S+E AG
Sbjct:  165 RFSSYHEKFRGGTMSLTDDENRHELAFNLGWRDIVPIRNKKIPSTYAASPSIMAEAEPSTKSSVKYVYNDDQRNDSALPTSGRLLRTSLEVAG 257
[Close]
BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Match: A0A1V9ZEL1_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEL1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.620e-15
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASLPVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG 279
            RFSS  E  RG T ++   +  H L++ +G RDI P R+  +P  YAAS  ++A+A PS KSS+KY + DD R+D  +P+ G   R S+E AG
Sbjct:  165 RFSSYHERFRGGTVSLTDENNRHELSMNLGWRDIVPVRNKKIPSTYAASPSIMAEAEPSTKSSVKYVYNDDQRNDAALPTAGRLLRTSLEVAG 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205663.5869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSQ9_9STRA1.840e-2457.95Sorting and assembly machinery component 50 n=1 Ta... [more]
W4GV81_9STRA6.580e-1849.46Omp85 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A6G0XGW8_9STRA2.320e-1749.46POTRA domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A024UXL9_9STRA1.560e-1647.31Omp85 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A067BSA8_SAPPC5.520e-1646.24POTRA domain-containing protein n=3 Tax=Saprolegni... [more]
W7U1Z2_9STRA7.410e-1646.24Sorting and assembly machinery component 50 putati... [more]
A0A485LIX1_9STRA7.590e-1647.31Aste57867_21946 protein n=1 Tax=Aphanomyces stella... [more]
F0W4E7_9STRA1.620e-1546.74Sorting and assembly machinery component 50 putati... [more]
A0A1V9ZWW2_9STRA3.620e-1545.16Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A1V9ZEL1_9STRA3.620e-1544.09Sorting and assembly machinery component 50 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205663contigH-elongata_contig205663:537..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue6.4e-15
Seed eggNOG ortholog157072.XP_008861809.1
Preferred nameSAM50
KEGG koko:K07277
KEGG TC1.B.33
GOsGO:0001401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805
EggNOG free text desc.sorting and assembly machinery component
EggNOG OGsCOG4775@1,KOG2602@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSorting and Assembly Machinery 50kDa protein (N-terminal)
Ec32 orthologEc-06_002300.1
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.7256877-CDS-H-elongata_contig205663:536..8151622930151.7256877-CDS-H-elongata_contig205663:536..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205663 537..815 -
1691679300.8766952-CDS-H-elongata_contig205663:536..8151691679300.8766952-CDS-H-elongata_contig205663:536..815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205663 537..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205663.5869.1prot_H-elongata_contig205663.5869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205663 537..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205663.5869.1

>prot_H-elongata_contig205663.5869.1 ID=prot_H-elongata_contig205663.5869.1|Name=mRNA_H-elongata_contig205663.5869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RFSSLLEHRRGVTATVRSSDGAHALALEIGLRDITPRRHPGVPYAYAASL
PVVADARPSVKSSMKYSFTDDSRDDPFVPSMGSFFRASVEGAG
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mRNA from alignment at H-elongata_contig205663:537..815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205663.5869.1 ID=mRNA_H-elongata_contig205663.5869.1|Name=mRNA_H-elongata_contig205663.5869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig205663:537..815- (Himanthalia elongata Himel1 dioecious)
AGATTCTCCTCGCTTCTGGAGCACCGTCGCGGAGTCACTGCCACGGTGCG
CTCATCTGACGGCGCCCACGCTCTTGCCCTCGAGATCGGCCTGCGCGACA
TCACGCCCCGAAGGCACCCGGGCGTTCCGTACGCTTACGCGGCGTCTCTA
CCCGTGGTGGCGGACGCGAGGCCCTCAGTCAAGAGCAGCATGAAGTACAG
CTTCACGGACGATAGTCGAGACGATCCCTTCGTGCCATCGATGGGTTCAT
TCTTTCGAGCCAGCGTGGAGGGGGCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig205663:537..815-

>mRNA_H-elongata_contig205663.5869.1 ID=mRNA_H-elongata_contig205663.5869.1|Name=mRNA_H-elongata_contig205663.5869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig205663:537..815- (Himanthalia elongata Himel1 dioecious)
AGATTCTCCTCGCTTCTGGAGCACCGTCGCGGAGTCACTGCCACGGTGCG
CTCATCTGACGGCGCCCACGCTCTTGCCCTCGAGATCGGCCTGCGCGACA
TCACGCCCCGAAGGCACCCGGGCGTTCCGTACGCTTACGCGGCGTCTCTA
CCCGTGGTGGCGGACGCGAGGCCCTCAGTCAAGAGCAGCATGAAGTACAG
CTTCACGGACGATAGTCGAGACGATCCCTTCGTGCCATCGATGGGTTCAT
TCTTTCGAGCCAGCGTGGAGGGGGCCGGTAGATTCTCCTCGCTTCTGGAG
CACCGTCGCGGAGTCACTGCCACGGTGCGCTCATCTGACGGCGCCCACGC
TCTTGCCCTCGAGATCGGCCTGCGCGACATCACGCCCCGAAGGCACCCGG
GCGTTCCGTACGCTTACGCGGCGTCTCTACCCGTGGTGGCGGACGCGAGG
CCCTCAGTCAAGAGCAGCATGAAGTACAGCTTCACGGACGATAGTCGAGA
CGATCCCTTCGTGCCATCGATGGGTTCATTCTTTCGAGCCAGCGTGGAGG
GGGCCGGT
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