mRNA_H-elongata_contig20561.5866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20561.5866.1
Unique NamemRNA_H-elongata_contig20561.5866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A2R4QQ51_9PHAE (Uncharacterized protein n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ51_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.260e-13
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPNR 132
            + N++TFA+FNASN KTSKI+K+KLL KS KLYF+PLYL PP +
Sbjct:   17 VYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPLYLMPPKQ 60          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: E6ZER5_ECTSI (Conserved hypothetical mitochondrial protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER5_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.930e-12
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            ++ QKTFALFNASN KTSKI +++L +K+AKLYFIPLYL PP 
Sbjct:   16 LSKQKTFALFNASNLKTSKITEIRLFLKNAKLYFIPLYLNPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A5K1KEM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A5K1KEM9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.860e-12
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            ++ QKTFALFNASN KTSKI +++L +K+AKLYFIPLYL PP 
Sbjct:   16 LSKQKTFALFNASNLKTSKITEIRLSLKNAKLYFIPLYLNPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A8F0K1C4_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0K1C4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.910e-11
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPNR 132
            +  Q+TFALFN SN KTS+I K++LL+++AKLYF+PLYL PP +
Sbjct:   16 LPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYFVPLYLNPPKQ 59          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A8F0FCU5_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FCU5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.870e-10
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            +  Q+TFALFN SN K SKI K++LL+++AKLY +PLYLTPP 
Sbjct:   16 LPKQRTFALFNGSNLKASKISKIRLLLQNAKLYSVPLYLTPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A1L6KY32_9PHAE (Uncharacterized protein n=7 Tax=Sargassum TaxID=3015 RepID=A0A1L6KY32_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.270e-10
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            ++ Q TF L NASN KTSKI+K+K+ ++  KLYF+PLYLTPP 
Sbjct:   16 LSKQTTFVLLNASNLKTSKIKKVKMSLRGGKLYFVPLYLTPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A3G5FPR1_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPR1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.270e-10
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            +  +KTFALFNASN KTSK++++KL ++ AKLY +PLYL PP 
Sbjct:   16 LPKEKTFALFNASNLKTSKVEEIKLSLQKAKLYHVPLYLKPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: S4S3S2_LAMHY (Uncharacterized protein n=3 Tax=Laminaria TaxID=33637 RepID=S4S3S2_LAMHY)

HSP 1 Score: 58.9 bits (141), Expect = 7.140e-10
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            +  Q+TFALFN SN KTS+I K++LL+++AKLY +PLYL PP 
Sbjct:   16 LPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYSVPLYLNPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A8F0FD44_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FD44_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-9
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            +  Q+TFALFN SN K S+I K++LL+++AKLY +PLYLTPP 
Sbjct:   16 LPEQRTFALFNGSNLKASQIAKIRLLLQNAKLYSVPLYLTPPK 58          
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A0U1WMR1_9PHAE (Uncharacterized protein n=2 Tax=Sargassum TaxID=3015 RepID=A0A0U1WMR1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.050e-9
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
            ++ Q TFA+ NASN KTSKI+K+K+ +K  K+YF PLYLTPP 
Sbjct:   16 LSKQTTFAILNASNLKTSKIKKVKMSLKRGKIYFTPLYLTPPK 58          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ51_9PHAE5.260e-1368.18Uncharacterized protein n=3 Tax=Fucus TaxID=3011 R... [more]
E6ZER5_ECTSI1.930e-1269.77Conserved hypothetical mitochondrial protein n=1 T... [more]
A0A5K1KEM9_ECTSI3.860e-1269.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8F0K1C4_9PHAE3.910e-1161.36Uncharacterized protein n=2 Tax=Ecklonia TaxID=105... [more]
A0A8F0FCU5_9PHAE1.870e-1062.79Uncharacterized protein n=4 Tax=Alariaceae TaxID=2... [more]
A0A1L6KY32_9PHAE5.270e-1060.47Uncharacterized protein n=7 Tax=Sargassum TaxID=30... [more]
A0A3G5FPR1_9PHAE5.270e-1060.47Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
S4S3S2_LAMHY7.140e-1060.47Uncharacterized protein n=3 Tax=Laminaria TaxID=33... [more]
A0A8F0FD44_9PHAE1.010e-960.47Uncharacterized protein n=4 Tax=Alariaceae TaxID=2... [more]
A0A0U1WMR1_9PHAE1.050e-960.47Uncharacterized protein n=2 Tax=Sargassum TaxID=30... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20561contigH-elongata_contig20561:6702..6833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.5551822-CDS-H-elongata_contig20561:6701..68331622930151.5551822-CDS-H-elongata_contig20561:6701..6833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20561 6702..6833 +
1691679300.8317432-CDS-H-elongata_contig20561:6701..68331691679300.8317432-CDS-H-elongata_contig20561:6701..6833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20561 6702..6833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20561.5866.1prot_H-elongata_contig20561.5866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20561 6702..6833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20561.5866.1

>prot_H-elongata_contig20561.5866.1 ID=prot_H-elongata_contig20561.5866.1|Name=mRNA_H-elongata_contig20561.5866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPNR
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mRNA from alignment at H-elongata_contig20561:6702..6833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20561.5866.1 ID=mRNA_H-elongata_contig20561.5866.1|Name=mRNA_H-elongata_contig20561.5866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig20561:6702..6833+ (Himanthalia elongata Himel1 dioecious)
ATAACTAACCAAAAAACCTTTGCACTTTTTAATGCAAGTAACTTTAAAAC GTCTAAAATCCAAAAACTAAAATTGCTGGTAAAATCGGCTAAACTTTATT TTATCCCTTTATATTTAACACCTCCCAACCGG
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Coding sequence (CDS) from alignment at H-elongata_contig20561:6702..6833+

>mRNA_H-elongata_contig20561.5866.1 ID=mRNA_H-elongata_contig20561.5866.1|Name=mRNA_H-elongata_contig20561.5866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig20561:6702..6833+ (Himanthalia elongata Himel1 dioecious)
ATAACTAACCAAAAAACCTTTGCACTTTTTAATGCAAGTAACTTTAAAAC
GTCTAAAATCCAAAAACTAAAATTGCTGGTAAAATCGGCTAAACTTTATT
TTATCCCTTTATATTTAACACCTCCCAACCGGATAACTAACCAAAAAACC
TTTGCACTTTTTAATGCAAGTAACTTTAAAACGTCTAAAATCCAAAAACT
AAAATTGCTGGTAAAATCGGCTAAACTTTATTTTATCCCTTTATATTTAA
CACCTCCCAACCGG
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