mRNA_H-elongata_contig20561.5866.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A2R4QQ51_9PHAE (Uncharacterized protein n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ51_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 5.260e-13 Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPNR 132
+ N++TFA+FNASN KTSKI+K+KLL KS KLYF+PLYL PP +
Sbjct: 17 VYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPLYLMPPKQ 60
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: E6ZER5_ECTSI (Conserved hypothetical mitochondrial protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER5_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.930e-12 Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
++ QKTFALFNASN KTSKI +++L +K+AKLYFIPLYL PP
Sbjct: 16 LSKQKTFALFNASNLKTSKITEIRLFLKNAKLYFIPLYLNPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A5K1KEM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A5K1KEM9_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 3.860e-12 Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
++ QKTFALFNASN KTSKI +++L +K+AKLYFIPLYL PP
Sbjct: 16 LSKQKTFALFNASNLKTSKITEIRLSLKNAKLYFIPLYLNPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A8F0K1C4_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0K1C4_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 3.910e-11 Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPNR 132
+ Q+TFALFN SN KTS+I K++LL+++AKLYF+PLYL PP +
Sbjct: 16 LPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYFVPLYLNPPKQ 59
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A8F0FCU5_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FCU5_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.870e-10 Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
+ Q+TFALFN SN K SKI K++LL+++AKLY +PLYLTPP
Sbjct: 16 LPKQRTFALFNGSNLKASKISKIRLLLQNAKLYSVPLYLTPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A1L6KY32_9PHAE (Uncharacterized protein n=7 Tax=Sargassum TaxID=3015 RepID=A0A1L6KY32_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 5.270e-10 Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
++ Q TF L NASN KTSKI+K+K+ ++ KLYF+PLYLTPP
Sbjct: 16 LSKQTTFVLLNASNLKTSKIKKVKMSLRGGKLYFVPLYLTPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A3G5FPR1_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPR1_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 5.270e-10 Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
+ +KTFALFNASN KTSK++++KL ++ AKLY +PLYL PP
Sbjct: 16 LPKEKTFALFNASNLKTSKVEEIKLSLQKAKLYHVPLYLKPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: S4S3S2_LAMHY (Uncharacterized protein n=3 Tax=Laminaria TaxID=33637 RepID=S4S3S2_LAMHY) HSP 1 Score: 58.9 bits (141), Expect = 7.140e-10 Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
+ Q+TFALFN SN KTS+I K++LL+++AKLY +PLYL PP
Sbjct: 16 LPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYSVPLYLNPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A8F0FD44_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FD44_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.010e-9 Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
+ Q+TFALFN SN K S+I K++LL+++AKLY +PLYLTPP
Sbjct: 16 LPEQRTFALFNGSNLKASQIAKIRLLLQNAKLYSVPLYLTPPK 58
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Match: A0A0U1WMR1_9PHAE (Uncharacterized protein n=2 Tax=Sargassum TaxID=3015 RepID=A0A0U1WMR1_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.050e-9 Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 1 ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPN 129
++ Q TFA+ NASN KTSKI+K+K+ +K K+YF PLYLTPP
Sbjct: 16 LSKQTTFAILNASNLKTSKIKKVKMSLKRGKIYFTPLYLTPPK 58 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20561.5866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20561.5866.1 >prot_H-elongata_contig20561.5866.1 ID=prot_H-elongata_contig20561.5866.1|Name=mRNA_H-elongata_contig20561.5866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp ITNQKTFALFNASNFKTSKIQKLKLLVKSAKLYFIPLYLTPPNRback to top mRNA from alignment at H-elongata_contig20561:6702..6833+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20561.5866.1 ID=mRNA_H-elongata_contig20561.5866.1|Name=mRNA_H-elongata_contig20561.5866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig20561:6702..6833+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20561:6702..6833+ >mRNA_H-elongata_contig20561.5866.1 ID=mRNA_H-elongata_contig20561.5866.1|Name=mRNA_H-elongata_contig20561.5866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig20561:6702..6833+ (Himanthalia elongata Himel1 dioecious)back to top |