mRNA_H-elongata_contig20557.5863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20557.5863.1
Unique NamemRNA_H-elongata_contig20557.5863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20557.5863.1 vs. uniprot
Match: D7G994_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G994_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.810e-33
Identity = 89/169 (52.66%), Postives = 107/169 (63.31%), Query Frame = 1 
Query:    1 RQSSIRLEKATLSGCHGGTNVLCARTCPTVPGIIASGGADKSLLVSLVGRRGWRGEW---VGRFATTDSRWTELHRIRLPAPVLSMDFCPTAAGGVPFGGGDXXXXXXXEGRGVLLAGSMDGGSYLITVDPSVAELGSSGXXXXXXXXXXXXXXXXXMKDHVKYVVVSR 498
            R + +R    TL GCHGGTNVLCAR CP +PGI+ASGGAD SL VS + +     E     G  A++ SR TELHR++L APVLSMDFCP++   VPF GG XXXX      G+LLAG MDG S+L+++D S    G   XXXXXX           MK+H KYVVV R
Sbjct:   78 RTACVRQVSDTLVGCHGGTNVLCARACPGLPGIVASGGADMSLQVSRLAQGLGDNEGNADSGGSASSSSRSTELHRLKLAAPVLSMDFCPSS---VPFRGGXXXXX-----XGLLLAGGMDGSSHLVSIDGSH---GGDAXXXXXXEETNGVALLASMKNHAKYVVVCR 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20557.5863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G994_ECTSI2.810e-3352.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20557contigH-elongata_contig20557:2501..6636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011380.1
Exons3
Model size498
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20557.5863.1prot_H-elongata_contig20557.5863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20557 2501..6636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.3319385-CDS-H-elongata_contig20557:2500..26711622930151.3319385-CDS-H-elongata_contig20557:2500..2671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20557 2501..2671 +
1691679300.7028477-CDS-H-elongata_contig20557:2500..26711691679300.7028477-CDS-H-elongata_contig20557:2500..2671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20557 2501..2671 +
1622930151.3480947-CDS-H-elongata_contig20557:5750..60171622930151.3480947-CDS-H-elongata_contig20557:5750..6017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20557 5751..6017 +
1691679300.7161238-CDS-H-elongata_contig20557:5750..60171691679300.7161238-CDS-H-elongata_contig20557:5750..6017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20557 5751..6017 +
1622930151.3596919-CDS-H-elongata_contig20557:6576..66361622930151.3596919-CDS-H-elongata_contig20557:6576..6636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20557 6577..6636 +
1691679300.7258027-CDS-H-elongata_contig20557:6576..66361691679300.7258027-CDS-H-elongata_contig20557:6576..6636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20557 6577..6636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20557.5863.1

>prot_H-elongata_contig20557.5863.1 ID=prot_H-elongata_contig20557.5863.1|Name=mRNA_H-elongata_contig20557.5863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
RQSSIRLEKATLSGCHGGTNVLCARTCPTVPGIIASGGADKSLLVSLVGR
RGWRGEWVGRFATTDSRWTELHRIRLPAPVLSMDFCPTAAGGVPFGGGDS
GGGGGGEGRGVLLAGSMDGGSYLITVDPSVAELGSSGEGGGGGGAWNGVA
LVASMKDHVKYVVVSR
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mRNA from alignment at H-elongata_contig20557:2501..6636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20557.5863.1 ID=mRNA_H-elongata_contig20557.5863.1|Name=mRNA_H-elongata_contig20557.5863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4136bp|location=Sequence derived from alignment at H-elongata_contig20557:2501..6636+ (Himanthalia elongata Himel1 dioecious)
AGGCAATCGAGTATCCGCCTCGAGAAGGCCACCCTAAGCGGCTGCCATGG
GGGGACGAACGTGCTGTGTGCGCGCACTTGTCCTACCGTTCCCGGGATCA
TCGCTAGCGGAGGAGCGGACAAATCGCTCCTGGTGAGCCTCGTTGGAAGG
CGGGGATGGCGAGGGGAGTGGGTTCGAGATTAGACACCGAACTGGTCTAT
GTAACGGTTGCAGAGCTTAGCATCTCGGAGGTAAGGTGCTCGTATGTAGT
GAATTTAAATATGTTGGATCGAGTTTGCACATTTAGCTTCTGGTCCCCTG
GCCCGGTCCCGCTATTATCGCGGTTGACGTCACCAGCGGAGCAGCGATGG
AGAAAAAGAATACAAAAGAGAGAAGACTATGTGCAATGATTTACACATAA
GATAAGACACAATGTAGAGATGTTCGACTCCACGTTCATGTATCATCGTC
ATGACGTCATACCACTCATTCAAGGAGGTGCACGCGTGGAATGGAAGATG
CTAGGGGAGTAGTCAATAAATAGCAAGCATTACAGAGGAGTAGTCAATCT
CCCATTTCCAATGCCAGCTCCTGACGCATTTTCCTCCTCTCCTGACCCAT
CCCTGGGTTCGAAAGACAGTTACTACATATCCATCCTTTTTCCCCGGGTA
GTGACAGTCTCGTAACCCGAAACAATTCCCAGCGAACGCCACCCTGTATC
ACGCCCAGTACCGTACACTACTACCGTGATCTCCGGAACCGCCACGATCT
TTGATGCCTCGCGTGCCTCTGTTGCGGGTGTGTTTGGCGGGTCACCGTGT
CATCCTCTTTCTTTCTCGACTCGCCCATGACACTGTTTTTCCGTCGATGG
CGTAGCCAGTCACTTCGTGGCGTCCTGGGCCCTGGCGATCCAATTTTCCT
CGATCATGAAGGCCTGAAGGTAAGATCATCTCGGAGGCATGTCCACCACG
TCATTTCGTGACCACGACAGTAAACCGATCCCCCTTTTGAGTTTTCCAGA
CGTCATCCTTCTTGGCAGCCTCTGCTTGGAGACGCGCGCCATCCCTCCCG
CCCACAGCAGCCTCTTGGCTCGAACAGTCGCCTCGACAGTGTCACAGTCC
GTTCTCTTGAAAGCGCGTTACGCGCTACGGTAGAACACCACGCGATCGGT
TTTGCGTTTCCGTCTAAATCCAATGACACGTAGGAGAAGTCGGTGGTTGA
CCACACGAAGCTTGTTGCAATGTCCCTTGCGAACTGACCACATCACGCAT
CCGTACAGGAGGGTCACCAGCTCTTTCATTTTGAGCAGCCGTATTTTGAA
CTCGAATTTAACTTGGGGTTGGTCGTAGAGCTCTCTCTCTCTGTTGAAGC
ACTTAGATCGAAGCAATGCCAGTCATGCGCGCCGACAGCGATGTCCGGGC
ACTCTATCACGATGCCTCCGAGCTACACGTACGCCACCGTCTGCGCATAG
TTTTGGCCGGCGGTTGTGATGCTGATCCTTGGCACCTCTTCGTGCGATGT
CGACCTACACATCGTCTATGCTTTCTTCTCCGACACACGCTTTACACACC
TCGATAATGATGACCATTATTCTTGCGAGGTCTTGCATCCTACACGAGAC
AATGCACGCGTCGTCGGAATACAACATGCCCCACACCGTTCGCAGAACAT
TCTCTATCGCTGTCTCAGGTCCCACAGTATCCTTTGGTTCCTTTAGTATC
TCATGTACAAAGCTCTCCAGTATCACCCGATATTTACTAAAGCCTACCAA
GAGGACGTCACTCAACACGGCAGCGAAGAAGATGTTGACGTGAAGAGCAG
TCGGAAGAGCACTTAGCCCCGGAGTAGTCCCTGTTCCACGCCAAAGCAGT
CTGAACACATGCTGTCATCCGAACGTAAGAACCCCATCATGCTGTCGTAG
AACTCTCGAACATCCGACTGCAATCATCACCAGCGGTATCCTAATCAAGC
GAGTACCTCTCATAGGACTCGTATGCTTTCCGAAGTTAGATGAAGCACAG
GTATAGCGATTCTCGACGCTCCTGCCCGAGCATTTGCAGTCGACGTTTGA
CGAGCATAATACCCATGGAGGACCTCGCGGGACAAAACCCGCAATGCCCC
TAGGCCTCGCAGTAGTTAGCAATCCGTTGTGGTACCACCTTGAGAAGAAC
CTTTCCAGCGTAGGCGACAAGAGTGATGCCCCCAATAGTTTTGTAGCACC
TTGAGGGTCGCATATTTTCACTCCTTCGGCACCGGCTCTCCATACCAAAT
CAAAATGACAGGCTTTAGGTGAAGTCCCATGTTACGGAACTCGATTGGCA
TGTCGTCGATGCCGACCACCTTGCCGTTTGCCAGGGACCTCACCGCGGCT
TGCACTTCCGTCGTCGTCATATCATCCCTAACATCTAGAGGTGTACGAGG
CCGTGGATCGCTTCCAATTGAAGGGCGTCTGAATATGCGTTGAGCAGCGT
GCTCTACCATGGACTAGGGTCTGGCGAACATCGTGTAGCATGGATTAAAC
AGGCCCATCCCGTTTGGGTTGGTTGTCCGTATGGAGTGCTGATGACAGCG
GCTATAGAGCCCGGAGAAATGTATATCCTCTGTTAGGCTAGCGTGTACAG
TAGTCATTCCTGCTGCGGAAAGGTTACACGCTAACCTAACAAATGCTGAA
GCGCGAGAGGGGTCGAACAAACCCCCAAGCTCATCCCAAGCTTGGCAATA
ATCCCGCAATCAGCGCTATCATTTACTACCGGTCGATAAAAAAAAATGTG
CTAGATGAAGTCACCAGGACTTGGACCACCGCCATCATATTAGCTTGCTA
CCACTTATATATAGACTAGAAATGATTGGCGACGCGCTGATCAAAGACCC
TCAGCGGCGGTTATTTCTGTTCGGTGGCAATATTTGCTCTATATGTACTA
CAGTAGTATAAAATATAGTATTAAATACAGTATGAAATACAGTGTGAAAT
CATCATATACTAGATTCCTGCTTGTCAGTCGCCTCCGTTACACGACGGAA
TACGATTATTAGTATGTTTGTTTGTCGGCTTCTCCGCTCTGTCCCCCCTT
TGATAGGAGCGATATATATCCCCCTCTAATAGGGGTGACAAGGGCAGGCG
GCACTTTTATACGCCCGCACGATTTTGCCATGGGTGCGGGTGGGGGTGTT
ATGTGTGGGTATTGGGTGGGTGGTGTATGTTGAACGGCAATCGATTTTCC
AGCGATTGACACCCCGCTAACGATGACAATCAAACGGCGGAAAAAAACAG
GTTGGCCGTTTCGCGACGACGGACTCGCGCTGGACCGAGCTCCATCGCAT
CAGGCTTCCTGCCCCCGTGCTCTCCATGGACTTTTGCCCCACTGCGGCGG
GGGGTGTTCCATTCGGAGGAGGTGATAGCGGGGGCGGGGGCGGAGGAGAG
GGGAGAGGAGTACTCTTGGCCGGGAGCATGGACGGCGGCAGCTATCTCAT
CACCGTGGATCCGTCCGTCGCTGAGTTAGGATCCTCGGGCGAGGGGGGGG
GGGGGGGGGGGGCTTGGGTTTATCTTGAGGTGGTGGTGGTGGGTGGCTCG
GTTGGGTGTGATGGTGGTGGGGGGGGGGGTTGTTGGAGTCTGTGCGTATT
CTCGTCCTTCAGGCGTACGTAGTTGTCATTATGTCGTGAGGTAGGCGGAT
GAAGATTTACAGGTATCCTTCCCCGTCGAAGCCCTCGAAGCTTCAATCCC
ATCCAATCCTCCAATCCTATATACTTAAAGGTTAGCGTACAAAATCAAGG
CCCTAGCTGCTGTACAGAATACGGTAGCCCCACTCCAGTGTGGTGTGACG
TCATCTGGCGGCGTTATCTGGCGGCGCAACCCCTCCCCCAAAAGAAAGAC
ATATATCGATGTAAAAGAGGTATATCCCATGCAATAGAGAGCATATTGCA
TAATACCGTACAGCTTTCTCCTCTAGCGACCGTTAAACTTTTCCTCCTAC
ATCGAAACGCTTTGCAGAACAACGGAGGGACATGGCGATGGCGATGAGGG
GAAAACACCAGAAGACCGGGGCGGGGTCTGCAGCAGCAGCAGCAGTAGTA
GCAGTGCTCCCGATAGCATTCGTAAGAACGGTGTGGCCTTGGTGGCCTCG
ATGAAGGACCACGTCAAGTACGTCGTGGTGTCCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig20557:2501..6636+

>mRNA_H-elongata_contig20557.5863.1 ID=mRNA_H-elongata_contig20557.5863.1|Name=mRNA_H-elongata_contig20557.5863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig20557:2501..6636+ (Himanthalia elongata Himel1 dioecious)
AGGCAATCGAGTATCCGCCTCGAGAAGGCCACCCTAAGCGGCTGCCATGG
GGGGACGAACGTGCTGTGTGCGCGCACTTGTCCTACCGTTCCCGGGATCA
TCGCTAGCGGAGGAGCGGACAAATCGCTCCTGGTGAGCCTCGTTGGAAGG
CGGGGATGGCGAGGGGAGTGGAGGCAATCGAGTATCCGCCTCGAGAAGGC
CACCCTAAGCGGCTGCCATGGGGGGACGAACGTGCTGTGTGCGCGCACTT
GTCCTACCGTTCCCGGGATCATCGCTAGCGGAGGAGCGGACAAATCGCTC
CTGGTGAGCCTCGTTGGAAGGCGGGGATGGCGAGGGGAGTGGGTTGGCCG
TTTCGCGACGACGGACTCGCGCTGGACCGAGCTCCATCGCATCAGGCTTC
CTGCCCCCGTGCTCTCCATGGACTTTTGCCCCACTGCGGCGGGGGGTGTT
CCATTCGGAGGAGGTGATAGCGGGGGCGGGGGCGGAGGAGAGGGGAGAGG
AGTACTCTTGGCCGGGAGCATGGACGGCGGCAGCTATCTCATCACCGTGG
ATCCGTCCGTCGCTGAGTTAGGATCCTCGGGCGAGGGGGGGGGGGGGGGG
GGGGCTTGGGTTGGCCGTTTCGCGACGACGGACTCGCGCTGGACCGAGCT
CCATCGCATCAGGCTTCCTGCCCCCGTGCTCTCCATGGACTTTTGCCCCA
CTGCGGCGGGGGGTGTTCCATTCGGAGGAGGTGATAGCGGGGGCGGGGGC
GGAGGAGAGGGGAGAGGAGTACTCTTGGCCGGGAGCATGGACGGCGGCAG
CTATCTCATCACCGTGGATCCGTCCGTCGCTGAGTTAGGATCCTCGGGCG
AGGGGGGGGGGGGGGGGGGGGCTTGGAACGGTGTGGCCTTGGTGGCCTCG
ATGAAGGACCACGTCAAGTACGTCGTGGTGTCCAGGAACGGTGTGGCCTT
GGTGGCCTCGATGAAGGACCACGTCAAGTACGTCGTGGTGTCCAGG
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