prot_H-elongata_contig20557.5863.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20557.5863.1
Unique Nameprot_H-elongata_contig20557.5863.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length166
Homology
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BLAST of mRNA_H-elongata_contig20557.5863.1 vs. uniprot
Match: D7G994_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G994_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.810e-33
Identity = 89/169 (52.66%), Postives = 107/169 (63.31%), Query Frame = 0 
Query:    1 RQSSIRLEKATLSGCHGGTNVLCARTCPTVPGIIASGGADKSLLVSLVGRRGWRGEW---VGRFATTDSRWTELHRIRLPAPVLSMDFCPTAAGGVPFGGGDXXXXXXXEGRGVLLAGSMDGGSYLITVDPSVAELGSSGXXXXXXXXXXXXXXXXXMKDHVKYVVVSR 166
            R + +R    TL GCHGGTNVLCAR CP +PGI+ASGGAD SL VS + +     E     G  A++ SR TELHR++L APVLSMDFCP++   VPF GG XXXX      G+LLAG MDG S+L+++D S    G   XXXXXX           MK+H KYVVV R
Sbjct:   78 RTACVRQVSDTLVGCHGGTNVLCARACPGLPGIVASGGADMSLQVSRLAQGLGDNEGNADSGGSASSSSRSTELHRLKLAAPVLSMDFCPSS---VPFRGGXXXXX-----XGLLLAGGMDGSSHLVSIDGSH---GGDAXXXXXXEETNGVALLASMKNHAKYVVVCR 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20557.5863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G994_ECTSI2.810e-3352.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20557contigH-elongata_contig20557:2501..6636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20557.5863.1mRNA_H-elongata_contig20557.5863.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20557 2501..6636 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20557.5863.1 ID=prot_H-elongata_contig20557.5863.1|Name=mRNA_H-elongata_contig20557.5863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
RQSSIRLEKATLSGCHGGTNVLCARTCPTVPGIIASGGADKSLLVSLVGR
RGWRGEWVGRFATTDSRWTELHRIRLPAPVLSMDFCPTAAGGVPFGGGDS
GGGGGGEGRGVLLAGSMDGGSYLITVDPSVAELGSSGEGGGGGGAWNGVA
LVASMKDHVKYVVVSR
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