mRNA_H-elongata_contig205311.5855.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205311.5855.1
Unique NamemRNA_H-elongata_contig205311.5855.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205311.5855.1 vs. uniprot
Match: A0A1E7EJM5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJM5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.940e-5
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   16 FPLIVNTSHMAQMREDIARNMGQ-STFEEAFHILCDDKSRKYSQFDIMFNYLWHNKHDEYFWSIARVGN 219
            FP+I++  H+  +R++I R   +  TF++ F  L  +K   YSQF IMF YLW +  ++Y W     GN
Sbjct:  254 FPVILHRKHLPMIRQEILRVHPEFDTFDDFFKFLSREKDA-YSQFCIMFEYLWMHHRNDYNWHFEADGN 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205311.5855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1E7EJM5_9STRA4.940e-537.68Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205311contigH-elongata_contig205311:170..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930150.3432977-CDS-H-elongata_contig205311:169..3881622930150.3432977-CDS-H-elongata_contig205311:169..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205311 170..388 +
1691679300.272816-CDS-H-elongata_contig205311:169..3881691679300.272816-CDS-H-elongata_contig205311:169..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205311 170..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205311.5855.1prot_H-elongata_contig205311.5855.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205311 170..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205311.5855.1

>prot_H-elongata_contig205311.5855.1 ID=prot_H-elongata_contig205311.5855.1|Name=mRNA_H-elongata_contig205311.5855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MTPYSFPLIVNTSHMAQMREDIARNMGQSTFEEAFHILCDDKSRKYSQFD
IMFNYLWHNKHDEYFWSIARVGN
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mRNA from alignment at H-elongata_contig205311:170..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205311.5855.1 ID=mRNA_H-elongata_contig205311.5855.1|Name=mRNA_H-elongata_contig205311.5855.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig205311:170..388+ (Himanthalia elongata Himel1 dioecious)
ATGACGCCCTACTCCTTTCCATTGATTGTAAACACATCACACATGGCACA
AATGCGTGAGGATATTGCACGCAATATGGGCCAATCTACGTTTGAAGAGG
CGTTCCATATACTATGCGATGACAAATCACGGAAATATTCTCAGTTTGAT
ATCATGTTCAACTACTTATGGCACAACAAGCATGACGAATACTTCTGGAG
CATCGCTCGGGTGGGAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig205311:170..388+

>mRNA_H-elongata_contig205311.5855.1 ID=mRNA_H-elongata_contig205311.5855.1|Name=mRNA_H-elongata_contig205311.5855.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig205311:170..388+ (Himanthalia elongata Himel1 dioecious)
ATGACGCCCTACTCCTTTCCATTGATTGTAAACACATCACACATGGCACA
AATGCGTGAGGATATTGCACGCAATATGGGCCAATCTACGTTTGAAGAGG
CGTTCCATATACTATGCGATGACAAATCACGGAAATATTCTCAGTTTGAT
ATCATGTTCAACTACTTATGGCACAACAAGCATGACGAATACTTCTGGAG
CATCGCTCGGGTGGGAAATATGACGCCCTACTCCTTTCCATTGATTGTAA
ACACATCACACATGGCACAAATGCGTGAGGATATTGCACGCAATATGGGC
CAATCTACGTTTGAAGAGGCGTTCCATATACTATGCGATGACAAATCACG
GAAATATTCTCAGTTTGATATCATGTTCAACTACTTATGGCACAACAAGC
ATGACGAATACTTCTGGAGCATCGCTCGGGTGGGAAAT
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