mRNA_H-elongata_contig205220.5853.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A6H5JQF4_9PHAE (HCO3_cotransp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF4_9PHAE) HSP 1 Score: 125 bits (315), Expect = 6.370e-34 Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 34 NRYALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
RYAL LPTLTVP ALTTTVGRPWLVP MTLPVWARWAAF PALMSTVLLFMDQNITVRLVN+KQH LKKG
Sbjct: 5 RRYALALPTLTVPSALTTTVGRPWLVPFMTLPVWARWAAFFPALMSTVLLFMDQNITVRLVNAKQHKLKKG 75
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: D7FMX9_ECTSI (Boron transporter 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX9_ECTSI) HSP 1 Score: 126 bits (316), Expect = 6.350e-32 Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 1
Query: 34 NRYALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
+RYAL LPTLTVP ALTTTVGRPWLVP MTLPVWARWAAF PALMSTVLLFMDQNITVRLVN+KQH LKKG
Sbjct: 527 SRYALALPTLTVPSALTTTVGRPWLVPFMTLPVWARWAAFFPALMSTVLLFMDQNITVRLVNAKQHKLKKG 597
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A4D9DEQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEQ9_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.150e-21 Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
LPTL +P + +T++GRPWLV + LP+WARWAAF+PALMS+VLLFMDQNITVRLVNS H +KKG
Sbjct: 347 LPTLLIPDSFSTSLGRPWLVNIFALPIWARWAAFIPALMSSVLLFMDQNITVRLVNSPSHKIKKG 411
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A1Z5KC09_FISSO (Solute carrier family 4 (Anion exchanger), member 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC09_FISSO) HSP 1 Score: 94.7 bits (234), Expect = 7.290e-21 Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 40 YALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
+ + LP L +P TT GRPWL+PL+ LPVWARWA+FLPALM+TVLLF+DQNITVRLVN+ ++++ KG
Sbjct: 302 HGVTLPALAIPSQFGTTTGRPWLIPLLDLPVWARWASFLPALMATVLLFLDQNITVRLVNNNKYNMTKG 370
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A835YV61_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV61_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.290e-20 Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
L TL VP A TTT GRPW VPL+ LP WAR AA +PALMSTVLLFMDQNITVRLVN+++H LKKG
Sbjct: 270 LQTLAVPAAFTTTAGRPWRVPLLDLPPWARAAALVPALMSTVLLFMDQNITVRLVNAREHKLKKG 334
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A7S4QDM1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QDM1_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.150e-20 Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
LP+L +P TT GRPWLVPLM LPVWARW FLPA+M+TVLLF+DQNITVR+VN+ ++ ++KG
Sbjct: 242 LPSLAIPSTFATTSGRPWLVPLMDLPVWARWGTFLPAIMATVLLFLDQNITVRVVNNPRYKMEKG 306
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: K0SIG1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIG1_THAOC) HSP 1 Score: 93.2 bits (230), Expect = 2.230e-20 Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
LP L +P TT GRPWLVPL LPVWARW AF PALM+TVLLF+DQNITVRLVN+ Q+ ++KG
Sbjct: 230 LPALAIPQTFATTSGRPWLVPLADLPVWARWGAFFPALMATVLLFLDQNITVRLVNNPQYKMQKG 294
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A7S1Z6H0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z6H0_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 6.590e-20 Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
LP+L +P TT GRPWLVPLM LPVWARW FLPA+M+TVLLF+DQNITVR+VN+ ++ ++KG
Sbjct: 320 LPSLAIPSTFATTSGRPWLVPLMDLPVWARWGTFLPAIMATVLLFLDQNITVRVVNNPRYKMEKG 384
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A0G4GX26_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX26_VITBC) HSP 1 Score: 92.0 bits (227), Expect = 6.600e-20 Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 37 RYALVLPTLTVPMALTTTVGRPWLV--PLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKK 243
RY + LPTL++P ALTT+ GRPWL+ L +LP+W RW A LPALM TVLLFMDQNITVRLVNS +H LKK
Sbjct: 316 RYGIRLPTLSMPSALTTSTGRPWLMLRSLSSLPLWVRWGAALPALMCTVLLFMDQNITVRLVNSNKHKLKK 386
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: B7FYF1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYF1_PHATC) HSP 1 Score: 91.7 bits (226), Expect = 9.070e-20 Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
LP+L++P TT GRPWLVP++ PVWARWAAFLPALM+TVLLF+DQNITVRLVN+ + ++KG
Sbjct: 334 LPSLSIPAVFGTTSGRPWLVPILDFPVWARWAAFLPALMATVLLFLDQNITVRLVNNPRWKMEKG 398 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig205220.5853.1 >prot_H-elongata_contig205220.5853.1 ID=prot_H-elongata_contig205220.5853.1|Name=mRNA_H-elongata_contig205220.5853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp MIPLSICLLSLNRYALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAback to top mRNA from alignment at H-elongata_contig205220:153..401+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig205220.5853.1 ID=mRNA_H-elongata_contig205220.5853.1|Name=mRNA_H-elongata_contig205220.5853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig205220:153..401+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig205220:153..401+ >mRNA_H-elongata_contig205220.5853.1 ID=mRNA_H-elongata_contig205220.5853.1|Name=mRNA_H-elongata_contig205220.5853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig205220:153..401+ (Himanthalia elongata Himel1 dioecious)back to top |