mRNA_H-elongata_contig205220.5853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205220.5853.1
Unique NamemRNA_H-elongata_contig205220.5853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A6H5JQF4_9PHAE (HCO3_cotransp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.370e-34
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   34 NRYALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
             RYAL LPTLTVP ALTTTVGRPWLVP MTLPVWARWAAF PALMSTVLLFMDQNITVRLVN+KQH LKKG
Sbjct:    5 RRYALALPTLTVPSALTTTVGRPWLVPFMTLPVWARWAAFFPALMSTVLLFMDQNITVRLVNAKQHKLKKG 75          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: D7FMX9_ECTSI (Boron transporter 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX9_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 6.350e-32
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   34 NRYALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            +RYAL LPTLTVP ALTTTVGRPWLVP MTLPVWARWAAF PALMSTVLLFMDQNITVRLVN+KQH LKKG
Sbjct:  527 SRYALALPTLTVPSALTTTVGRPWLVPFMTLPVWARWAAFFPALMSTVLLFMDQNITVRLVNAKQHKLKKG 597          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A4D9DEQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEQ9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.150e-21
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            LPTL +P + +T++GRPWLV +  LP+WARWAAF+PALMS+VLLFMDQNITVRLVNS  H +KKG
Sbjct:  347 LPTLLIPDSFSTSLGRPWLVNIFALPIWARWAAFIPALMSSVLLFMDQNITVRLVNSPSHKIKKG 411          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A1Z5KC09_FISSO (Solute carrier family 4 (Anion exchanger), member 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC09_FISSO)

HSP 1 Score: 94.7 bits (234), Expect = 7.290e-21
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   40 YALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            + + LP L +P    TT GRPWL+PL+ LPVWARWA+FLPALM+TVLLF+DQNITVRLVN+ ++++ KG
Sbjct:  302 HGVTLPALAIPSQFGTTTGRPWLIPLLDLPVWARWASFLPALMATVLLFLDQNITVRLVNNNKYNMTKG 370          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A835YV61_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV61_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.290e-20
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            L TL VP A TTT GRPW VPL+ LP WAR AA +PALMSTVLLFMDQNITVRLVN+++H LKKG
Sbjct:  270 LQTLAVPAAFTTTAGRPWRVPLLDLPPWARAAALVPALMSTVLLFMDQNITVRLVNAREHKLKKG 334          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A7S4QDM1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QDM1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.150e-20
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            LP+L +P    TT GRPWLVPLM LPVWARW  FLPA+M+TVLLF+DQNITVR+VN+ ++ ++KG
Sbjct:  242 LPSLAIPSTFATTSGRPWLVPLMDLPVWARWGTFLPAIMATVLLFLDQNITVRVVNNPRYKMEKG 306          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: K0SIG1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIG1_THAOC)

HSP 1 Score: 93.2 bits (230), Expect = 2.230e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            LP L +P    TT GRPWLVPL  LPVWARW AF PALM+TVLLF+DQNITVRLVN+ Q+ ++KG
Sbjct:  230 LPALAIPQTFATTSGRPWLVPLADLPVWARWGAFFPALMATVLLFLDQNITVRLVNNPQYKMQKG 294          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A7S1Z6H0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z6H0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.590e-20
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            LP+L +P    TT GRPWLVPLM LPVWARW  FLPA+M+TVLLF+DQNITVR+VN+ ++ ++KG
Sbjct:  320 LPSLAIPSTFATTSGRPWLVPLMDLPVWARWGTFLPAIMATVLLFLDQNITVRVVNNPRYKMEKG 384          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: A0A0G4GX26_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX26_VITBC)

HSP 1 Score: 92.0 bits (227), Expect = 6.600e-20
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1
Query:   37 RYALVLPTLTVPMALTTTVGRPWLV--PLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKK 243
            RY + LPTL++P ALTT+ GRPWL+   L +LP+W RW A LPALM TVLLFMDQNITVRLVNS +H LKK
Sbjct:  316 RYGIRLPTLSMPSALTTSTGRPWLMLRSLSSLPLWVRWGAALPALMCTVLLFMDQNITVRLVNSNKHKLKK 386          
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Match: B7FYF1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYF1_PHATC)

HSP 1 Score: 91.7 bits (226), Expect = 9.070e-20
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   52 LPTLTVPMALTTTVGRPWLVPLMTLPVWARWAAFLPALMSTVLLFMDQNITVRLVNSKQHHLKKG 246
            LP+L++P    TT GRPWLVP++  PVWARWAAFLPALM+TVLLF+DQNITVRLVN+ +  ++KG
Sbjct:  334 LPSLSIPAVFGTTSGRPWLVPILDFPVWARWAAFLPALMATVLLFLDQNITVRLVNNPRWKMEKG 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205220.5853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQF4_9PHAE6.370e-3490.14HCO3_cotransp domain-containing protein n=1 Tax=Ec... [more]
D7FMX9_ECTSI6.350e-3290.14Boron transporter 1 n=1 Tax=Ectocarpus siliculosus... [more]
A0A4D9DEQ9_9STRA2.150e-2170.77Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1Z5KC09_FISSO7.290e-2163.77Solute carrier family 4 (Anion exchanger), member ... [more]
A0A835YV61_9STRA1.290e-2075.38Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A7S4QDM1_9STRA2.150e-2066.15Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0SIG1_THAOC2.230e-2069.23Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1Z6H0_9STRA6.590e-2066.15Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A0G4GX26_VITBC6.600e-2069.01Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
B7FYF1_PHATC9.070e-2067.69Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205220contigH-elongata_contig205220:153..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D7FMX9
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930150.2035067-CDS-H-elongata_contig205220:152..4011622930150.2035067-CDS-H-elongata_contig205220:152..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205220 153..401 +
1691679300.1848156-CDS-H-elongata_contig205220:152..4011691679300.1848156-CDS-H-elongata_contig205220:152..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205220 153..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205220.5853.1prot_H-elongata_contig205220.5853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205220 153..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205220.5853.1

>prot_H-elongata_contig205220.5853.1 ID=prot_H-elongata_contig205220.5853.1|Name=mRNA_H-elongata_contig205220.5853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MIPLSICLLSLNRYALVLPTLTVPMALTTTVGRPWLVPLMTLPVWARWAA
FLPALMSTVLLFMDQNITVRLVNSKQHHLKKG*
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mRNA from alignment at H-elongata_contig205220:153..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205220.5853.1 ID=mRNA_H-elongata_contig205220.5853.1|Name=mRNA_H-elongata_contig205220.5853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig205220:153..401+ (Himanthalia elongata Himel1 dioecious)
ATGATCCCCTTATCTATCTGTCTCCTATCTCTCAACAGATACGCCCTGGT GCTCCCCACCCTCACCGTACCGATGGCGCTAACGACCACTGTGGGCCGAC CCTGGCTGGTCCCCCTCATGACGTTGCCGGTGTGGGCTCGATGGGCTGCA TTTCTGCCCGCACTGATGAGCACGGTATTGTTATTCATGGACCAGAATAT CACCGTGCGTCTGGTGAACTCCAAGCAGCATCATCTCAAGAAAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig205220:153..401+

>mRNA_H-elongata_contig205220.5853.1 ID=mRNA_H-elongata_contig205220.5853.1|Name=mRNA_H-elongata_contig205220.5853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig205220:153..401+ (Himanthalia elongata Himel1 dioecious)
ATGATCCCCTTATCTATCTGTCTCCTATCTCTCAACAGATACGCCCTGGT
GCTCCCCACCCTCACCGTACCGATGGCGCTAACGACCACTGTGGGCCGAC
CCTGGCTGGTCCCCCTCATGACGTTGCCGGTGTGGGCTCGATGGGCTGCA
TTTCTGCCCGCACTGATGAGCACGGTATTGTTATTCATGGACCAGAATAT
CACCGTGCGTCTGGTGAACTCCAAGCAGCATCATCTCAAGAAAGGGTGAA
TGATCCCCTTATCTATCTGTCTCCTATCTCTCAACAGATACGCCCTGGTG
CTCCCCACCCTCACCGTACCGATGGCGCTAACGACCACTGTGGGCCGACC
CTGGCTGGTCCCCCTCATGACGTTGCCGGTGTGGGCTCGATGGGCTGCAT
TTCTGCCCGCACTGATGAGCACGGTATTGTTATTCATGGACCAGAATATC
ACCGTGCGTCTGGTGAACTCCAAGCAGCATCATCTCAAGAAAGGGTGA
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