mRNA_H-elongata_contig205021.5846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205021.5846.1
Unique NamemRNA_H-elongata_contig205021.5846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.920e-27
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILD+AGLENAD+LGLRTKDLSD
Sbjct:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDSAGLENADELGLRTKDLSD 54
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BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.160e-21
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRFLG DL NNKKI+YALTAIYGIGLSRAKEIL+ AGLEN D+ G+RTKDLSD
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILEKAGLENVDKEGVRTKDLSD 54
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BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRFLG DL NNK+I+YALT+IYGIGLSRAKEILD AGLEN D+ G+RTKDLSD
Sbjct:    1 MVRFLGRDLANNKRIKYALTSIYGIGLSRAKEILDKAGLENVDREGIRTKDLSD 54
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BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI)

HSP 1 Score: 87.8 bits (216), Expect = 4.670e-21
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRFLG+DL NNKKI+YALT IYGIGLSRA+EILD+AGL+ AD  G+RTKDLSD
Sbjct:    1 MVRFLGIDLANNKKIKYALTGIYGIGLSRAEEILDSAGLKAADDAGVRTKDLSD 54
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BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.890e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRFLG DL NNKKI+YALT IYGIGLSRAKEIL++AGL N DQ+G R KDLSD
Sbjct:    1 MVRFLGRDLTNNKKIKYALTTIYGIGLSRAKEILESAGLTNIDQMGTRVKDLSD 54
[Close]
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.090e-19
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLS 159
            MVRFLG DL NNKKI+YALTAIYGIGLSRA EILD AGLE+ DQ  +RTKDLS
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRATEILDKAGLESLDQERIRTKDLS 53
[Close]
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.380e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVR LG DL N+KKI+YALTAIYGIGLSRAK+IL +AGL N D++G+RTKDLSD
Sbjct:    1 MVRLLGRDLPNDKKIKYALTAIYGIGLSRAKDILKSAGLNNLDEMGIRTKDLSD 54
[Close]
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.210e-19
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVR LG DL NNKKI+YALT IYGIGLSR+KEIL++AGL+NA++ G+R KDLSD
Sbjct:    1 MVRLLGRDLANNKKIKYALTTIYGIGLSRSKEILESAGLDNAEKKGIRVKDLSD 54
[Close]
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A7S6U9Z0_9STRA (30S ribosomal protein S13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.090e-17
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRF+GVDL  NKK++YALTAIYGIGLSRA+ IL  AGL N ++ GLRT+DLSD
Sbjct:    1 MVRFVGVDLPRNKKVKYALTAIYGIGLSRAEYILKKAGLINVEEKGLRTEDLSD 54
[Close]
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A8E5FAP0_9PHAE (Ribosomal protein S13 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5FAP0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.870e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 162
            MVRF GVDL++NKK++YALT IYG+GLSRA EIL NAGL N +   +R K+LSD
Sbjct:    1 MVRFNGVDLVDNKKLKYALTKIYGVGLSRATEILKNAGLNNIE---IRVKELSD 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FB58_9PHAE3.920e-2796.30Ribosomal protein S13 n=1 Tax=Desmarestia aculeata... [more]
D1J733_ECTSI1.160e-2183.3330S ribosomal protein S13, chloroplastic n=6 Tax=E... [more]
A0A6B7EUU3_9PHAE1.640e-2181.4830S ribosomal protein S13 n=3 Tax=Phaeophyceae Tax... [more]
A0A0R6LUW3_UNDPI4.670e-2179.6330S ribosomal protein S13, chloroplastic n=26 Tax=... [more]
A0A2R4QQ15_9PHAE1.890e-2079.6330S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3... [more]
A0A1I9LVX4_9PHAE3.090e-1981.1330S ribosomal protein S13, chloroplastic n=1 Tax=P... [more]
A0A8F0JX21_9PHAE4.380e-1975.93Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A141BSM2_9PHAE6.210e-1974.0730S ribosomal protein S13, chloroplastic n=14 Tax=... [more]
A0A7S6U9Z0_9STRA4.090e-1772.2230S ribosomal protein S13, chloroplastic n=1 Tax=S... [more]
A0A8E5FAP0_9PHAE1.870e-1466.67Ribosomal protein S13 n=1 Tax=Phaeophyceae sp. Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205021contigH-elongata_contig205021:14..175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog2880.D1J733
Preferred namerps13
KEGG rclassRC02795
KEGG koko:K02952,ko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00178,M00179,M00183
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0099@1,KOG3311@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.3589628-CDS-H-elongata_contig205021:13..1751622930149.3589628-CDS-H-elongata_contig205021:13..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205021 14..175 -
1691679299.8410547-CDS-H-elongata_contig205021:13..1751691679299.8410547-CDS-H-elongata_contig205021:13..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205021 14..175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205021.5846.1prot_H-elongata_contig205021.5846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205021 14..175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205021.5846.1

>prot_H-elongata_contig205021.5846.1 ID=prot_H-elongata_contig205021.5846.1|Name=mRNA_H-elongata_contig205021.5846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTK
DLSD
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mRNA from alignment at H-elongata_contig205021:14..175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205021.5846.1 ID=mRNA_H-elongata_contig205021.5846.1|Name=mRNA_H-elongata_contig205021.5846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig205021:14..175- (Himanthalia elongata Himel1 dioecious)
ATGGTTAGGTTTCTTGGGGTAGATTTAATAAATAATAAAAAAATTCAATA
TGCTTTAACAGCAATTTATGGAATTGGATTATCTCGAGCAAAAGAAATTC
TAGATAACGCAGGATTAGAAAATGCCGATCAATTAGGTCTTCGAACAAAA
GATTTATCTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig205021:14..175-

>mRNA_H-elongata_contig205021.5846.1 ID=mRNA_H-elongata_contig205021.5846.1|Name=mRNA_H-elongata_contig205021.5846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig205021:14..175- (Himanthalia elongata Himel1 dioecious)
ATGGTTAGGTTTCTTGGGGTAGATTTAATAAATAATAAAAAAATTCAATA
TGCTTTAACAGCAATTTATGGAATTGGATTATCTCGAGCAAAAGAAATTC
TAGATAACGCAGGATTAGAAAATGCCGATCAATTAGGTCTTCGAACAAAA
GATTTATCTGATATGGTTAGGTTTCTTGGGGTAGATTTAATAAATAATAA
AAAAATTCAATATGCTTTAACAGCAATTTATGGAATTGGATTATCTCGAG
CAAAAGAAATTCTAGATAACGCAGGATTAGAAAATGCCGATCAATTAGGT
CTTCGAACAAAAGATTTATCTGAT
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