prot_H-elongata_contig205021.5846.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig205021.5846.1
Unique Nameprot_H-elongata_contig205021.5846.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.920e-27
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILD+AGLENAD+LGLRTKDLSD
Sbjct:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDSAGLENADELGLRTKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.160e-21
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRFLG DL NNKKI+YALTAIYGIGLSRAKEIL+ AGLEN D+ G+RTKDLSD
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRAKEILEKAGLENVDKEGVRTKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRFLG DL NNK+I+YALT+IYGIGLSRAKEILD AGLEN D+ G+RTKDLSD
Sbjct:    1 MVRFLGRDLANNKRIKYALTSIYGIGLSRAKEILDKAGLENVDREGIRTKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI)

HSP 1 Score: 87.8 bits (216), Expect = 4.670e-21
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRFLG+DL NNKKI+YALT IYGIGLSRA+EILD+AGL+ AD  G+RTKDLSD
Sbjct:    1 MVRFLGIDLANNKKIKYALTGIYGIGLSRAEEILDSAGLKAADDAGVRTKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.890e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRFLG DL NNKKI+YALT IYGIGLSRAKEIL++AGL N DQ+G R KDLSD
Sbjct:    1 MVRFLGRDLTNNKKIKYALTTIYGIGLSRAKEILESAGLTNIDQMGTRVKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.090e-19
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLS 53
            MVRFLG DL NNKKI+YALTAIYGIGLSRA EILD AGLE+ DQ  +RTKDLS
Sbjct:    1 MVRFLGRDLANNKKIKYALTAIYGIGLSRATEILDKAGLESLDQERIRTKDLS 53          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.380e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVR LG DL N+KKI+YALTAIYGIGLSRAK+IL +AGL N D++G+RTKDLSD
Sbjct:    1 MVRLLGRDLPNDKKIKYALTAIYGIGLSRAKDILKSAGLNNLDEMGIRTKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.210e-19
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVR LG DL NNKKI+YALT IYGIGLSR+KEIL++AGL+NA++ G+R KDLSD
Sbjct:    1 MVRLLGRDLANNKKIKYALTTIYGIGLSRSKEILESAGLDNAEKKGIRVKDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A7S6U9Z0_9STRA (30S ribosomal protein S13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.090e-17
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRF+GVDL  NKK++YALTAIYGIGLSRA+ IL  AGL N ++ GLRT+DLSD
Sbjct:    1 MVRFVGVDLPRNKKVKYALTAIYGIGLSRAEYILKKAGLINVEEKGLRTEDLSD 54          
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Match: A0A8E5FAP0_9PHAE (Ribosomal protein S13 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5FAP0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.870e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTKDLSD 54
            MVRF GVDL++NKK++YALT IYG+GLSRA EIL NAGL N +   +R K+LSD
Sbjct:    1 MVRFNGVDLVDNKKLKYALTKIYGVGLSRATEILKNAGLNNIE---IRVKELSD 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205021.5846.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FB58_9PHAE3.920e-2796.30Ribosomal protein S13 n=1 Tax=Desmarestia aculeata... [more]
D1J733_ECTSI1.160e-2183.3330S ribosomal protein S13, chloroplastic n=6 Tax=E... [more]
A0A6B7EUU3_9PHAE1.640e-2181.4830S ribosomal protein S13 n=3 Tax=Phaeophyceae Tax... [more]
A0A0R6LUW3_UNDPI4.670e-2179.6330S ribosomal protein S13, chloroplastic n=26 Tax=... [more]
A0A2R4QQ15_9PHAE1.890e-2079.6330S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3... [more]
A0A1I9LVX4_9PHAE3.090e-1981.1330S ribosomal protein S13, chloroplastic n=1 Tax=P... [more]
A0A8F0JX21_9PHAE4.380e-1975.93Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A141BSM2_9PHAE6.210e-1974.0730S ribosomal protein S13, chloroplastic n=14 Tax=... [more]
A0A7S6U9Z0_9STRA4.090e-1772.2230S ribosomal protein S13, chloroplastic n=1 Tax=S... [more]
A0A8E5FAP0_9PHAE1.870e-1466.67Ribosomal protein S13 n=1 Tax=Phaeophyceae sp. Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 3..46
e-value: 2.0E-8
score: 34.7
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 4..54
score: 11.988
NoneNo IPR availableGENE3D1.10.8.50coord: 1..54
e-value: 6.6E-15
score: 56.8
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 2..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205021contigH-elongata_contig205021:14..175 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205021.5846.1mRNA_H-elongata_contig205021.5846.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig205021 14..175 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig205021.5846.1 ID=prot_H-elongata_contig205021.5846.1|Name=mRNA_H-elongata_contig205021.5846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MVRFLGVDLINNKKIQYALTAIYGIGLSRAKEILDNAGLENADQLGLRTK
DLSD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR010979Ribosomal_S13-like_H2TH