mRNA_H-elongata_contig20493.5840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20493.5840.1
Unique NamemRNA_H-elongata_contig20493.5840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20493.5840.1 vs. uniprot
Match: D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.110e-73
Identity = 117/164 (71.34%), Postives = 139/164 (84.76%), Query Frame = 1 
Query:    1 DNGEVATRRMRAVTSGQGEFLARRGFASGLVAHFLEETNSEFRVLQGETSAGMDAEQLEEAAVCLEEAFEPAVKRLRVKQSTEVVLDSLFEGVDDAGPFVVRFEVTITRCHPEDLEASSANALQLCAPAIREVMNKEGVMEREMHEIVFVGRPMWELVSPVLDL 492
            + G+VA  RMRA+TSGQGEFLARRGFA+GLV+HFLEETN EFRVLQG  S GM+A+QLE+AA  LEE F PAVKRLR + S +VVLDSLF+G DDAG FVVRFEVT+TRCHPED+++S A AL+ CA AI+E +  EGV +++ HE+VFVGRPMWELVSPVLDL
Sbjct:  305 EGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDL 468
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20493.5840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEB0_ECTSI1.110e-7371.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20493contigH-elongata_contig20493:3..2446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001570.1
Exons4
Model size492
Cds size465
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20493.5840.1prot_H-elongata_contig20493.5840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20493 3..2419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.9316103-CDS-H-elongata_contig20493:2..1681622930148.9316103-CDS-H-elongata_contig20493:2..168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 3..168 -
1691679299.6703777-CDS-H-elongata_contig20493:2..1681691679299.6703777-CDS-H-elongata_contig20493:2..168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 3..168 -
1622930148.9491417-CDS-H-elongata_contig20493:770..9581622930148.9491417-CDS-H-elongata_contig20493:770..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 771..958 -
1691679299.6803734-CDS-H-elongata_contig20493:770..9581691679299.6803734-CDS-H-elongata_contig20493:770..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 771..958 -
1622930148.965564-CDS-H-elongata_contig20493:1512..15791622930148.965564-CDS-H-elongata_contig20493:1512..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 1513..1579 -
1691679299.6885958-CDS-H-elongata_contig20493:1512..15791691679299.6885958-CDS-H-elongata_contig20493:1512..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 1513..1579 -
1622930148.9821584-CDS-H-elongata_contig20493:2375..24191622930148.9821584-CDS-H-elongata_contig20493:2375..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 2376..2419 -
1691679299.701601-CDS-H-elongata_contig20493:2375..24191691679299.701601-CDS-H-elongata_contig20493:2375..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20493 2376..2419 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.0025957-UTR-H-elongata_contig20493:2419..24461622930149.0025957-UTR-H-elongata_contig20493:2419..2446Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20493 2420..2446 -
1691679299.7174459-UTR-H-elongata_contig20493:2419..24461691679299.7174459-UTR-H-elongata_contig20493:2419..2446Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20493 2420..2446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20493.5840.1

>prot_H-elongata_contig20493.5840.1 ID=prot_H-elongata_contig20493.5840.1|Name=mRNA_H-elongata_contig20493.5840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
MRAVTSGQGEFLARRGFASGLVAHFLEETNSEFRVLQGETSAGMDAEQLE
EAAVCLEEAFEPAVKRLRVKQSTEVVLDSLFEGVDDAGPFVVRFEVTITR
CHPEDLEASSANALQLCAPAIREVMNKEGVMEREMHEIVFVGRPMWELVS
PVLDL
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mRNA from alignment at H-elongata_contig20493:3..2446-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20493.5840.1 ID=mRNA_H-elongata_contig20493.5840.1|Name=mRNA_H-elongata_contig20493.5840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2444bp|location=Sequence derived from alignment at H-elongata_contig20493:3..2446- (Himanthalia elongata Himel1 dioecious)
GACAATGGAGAGGTTGCGACGAGACGGATGAGGGCTGTGACCTCGGGGCA
AGGCGAATTTCTCGCGAGAAGGTGGAGTGACTACATTTCTTTTCAAGTGG
TTAATGACGCTTGTTTTTGTCCCGACGGTTTTTGTCGAGTCCTCCACACT
ATTGCTTACGGTGCTGCGTTCAAAGCCATATATCCAGTGCCCCGCTCCGT
TCACCCCATCCTCCAGCCCTCATTGCAGAAGGACAGGGCAGAGCGTGTAC
AATAGTGAAGTGGTTTAGAGAAGAAGCGCGCAGATGGCGTAGGGGGCATA
GGAATCACGACAACAGTTGCAAGGAACAAACAATCACCAGAAGGATGCAC
GTGTACCCCTCCTCGCGCGCGCGCATATACACACATCCAGTAGGAGGATC
AACACGAGAGTACCCTAAAAGGCCTATTAATAGCATGACAGGGACGGATT
GCGCGGTTATGCGCAATTTAATAAACACACACGTTAAATAGTAGACCGCA
GACAACCAGGGAGGGAGCTCAAGCTCAAACGTAGTAATGTACACATTCGA
ACCTGACGACAGTTGGTCTCCTGGACTGCACCTCTCACGTCTCTAAGAAG
GTGTGGATATTTGGAGGGTTGGAATGAGTTCAATGTTTTCTAAATAAAAA
CACAGGTGATTGTTTGAGCTTTTAAGTGCGTGTGGTTGGGTTGTTTGCCT
GTCTTTTCTGTGCATGAATCTACTTCCCCCTCTCGTATGTCCTGCCCCCT
CCCGCGCGTCCGAAGCATTTAACATAGTCGACTGCCCCACTGCCTTTGCC
GATACGCTCACCCGCGGCCCGATGGACGGTTTCGCCAAACGTTTGCCTTT
TCCGACGTGGTTTGCAGAGGATTCGCCTCGGGCCTGGTGGCGCACTTCTT
GGAGGAAACGAACAGCGAGTTTCGGGTGCTACAGGTGGGGTTGTTTCCAA
CCGAATCCCCTCCCCCTTTTGTGGGGAGATGCTTTTCGAGAGATTTTGTT
GGTGTATGGAGTTCCATACCGATTACGATGGTAATATTGCATCCACCACT
TTCATCGCCAAGCAGTAGTATGTCCTCCTATTTTTCCGCCCAGGCCGACT
GGCTGGACCGGGTTCGAATAGAGGCGGGAGAGGGTATTTCCAGTATGTTA
AACGCACGTATGTCGTATCCTAATGGATATAGACCACGCATCCCAATAAT
ACCTGGACGGAGCGATATGCCGGGTTTTCGCCAGCCAAGCTACGTTTCTC
AAGGGTTATACCAGCTTTTAATTTATCATATTTACGTATTCTAGGCCAAA
AAGGACAATGAACACTGGACATGAGTTAATTAGACAATGGACATTGGAAA
CACCGGGTAGCCAACTGTTGATCATTCGACTGGTGTTATTGTTACTATAA
GATACTATACTTTAGTACCGCAAGAAGATGCTGATCTCGGCGCGAACGCA
TAAGCGTCGCACACATATCAAACAAACCTGTCTGGCAGGGAGAGACCTCC
GCCGGTATGGACGCGGAGCAGCTTGAGGAAGCTGCCGTCTGTCTTGAGGA
GGCGTTTGAGCCCGCGGTTAAGCGCTTGCGCGTGAAGCAGTCAACGGAAG
TCGTACTTGACTCCCTTTTCGAAGGGGTTGACGACGCCGGGCCGTTTGTG
GTTCGCTTCGAGGTGACCATCACAAGGTGTGTCACAAGGTGTGCGCGCGC
TGCGGTGGTGTTGGTGGTCGATCTGGCGAGAAAAGGAAATATGCGCAAAA
TAAAGGCATATATATACTGGTAAATATATATAGAGAGAGAGGGAGGAGGG
AACTTGACTTTATAGTCTTGCTACCTTGCGCTCTGTCTAGACCCGAATCT
GACGCCGCTACTGACGTTCGGTTGGATGTTTCCTTCTCCGGATGATTGGT
CGCTACAGCGTTTTGACTGTTGTTAAAGGTATCTGGTTTTGCGAATTCGC
CGACAAGCGGCATCCACCTCGGCGATAATGTTATATATATATATATATAT
ATATATATACATCGGTGGTTTAGTTGGTATCTTCGAAATATTCAGACGTT
ATCTACGATATGTATGTGTCGCGGTGATATTACGAAAATGTTCCGATAGT
GGAGGGCGCCTTTGCACGATAGCGGATTTCGATGGGGGAGGTGCGTTCCG
TATCTTTTTAATATACCGAAGCCTGCGCCCGAGTCTCGTCGGGGTCTGTT
TAAGCGCCCACGCCACAGCTCTAGATCTCAACACTCCTTTCGTCTATTGT
TTCTTTTTTTGTGCCCTGGTATATGCAGGTGCCACCCTGAAGATTTGGAA
GCCAGCAGCGCGAACGCCCTGCAGCTGTGCGCGCCGGCGATCCGCGAGGT
GATGAATAAAGAGGGAGTCATGGAGCGCGAGATGCACGAGATCGTGTTCG
TTGGGAGGCCTATGTGGGAGCTAGTTTCTCCCGTCCTCGACCTT
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Coding sequence (CDS) from alignment at H-elongata_contig20493:3..2446-

>mRNA_H-elongata_contig20493.5840.1 ID=mRNA_H-elongata_contig20493.5840.1|Name=mRNA_H-elongata_contig20493.5840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig20493:3..2446- (Himanthalia elongata Himel1 dioecious)
ATGAGGGCTGTGACCTCGGGGCAAGGCGAATTTCTCGCGAGAAGATGAGG
GCTGTGACCTCGGGGCAAGGCGAATTTCTCGCGAGAAGAGGATTCGCCTC
GGGCCTGGTGGCGCACTTCTTGGAGGAAACGAACAGCGAGTTTCGGGTGC
TACAGAGGATTCGCCTCGGGCCTGGTGGCGCACTTCTTGGAGGAAACGAA
CAGCGAGTTTCGGGTGCTACAGGGAGAGACCTCCGCCGGTATGGACGCGG
AGCAGCTTGAGGAAGCTGCCGTCTGTCTTGAGGAGGCGTTTGAGCCCGCG
GTTAAGCGCTTGCGCGTGAAGCAGTCAACGGAAGTCGTACTTGACTCCCT
TTTCGAAGGGGTTGACGACGCCGGGCCGTTTGTGGTTCGCTTCGAGGTGA
CCATCACAAGGGAGAGACCTCCGCCGGTATGGACGCGGAGCAGCTTGAGG
AAGCTGCCGTCTGTCTTGAGGAGGCGTTTGAGCCCGCGGTTAAGCGCTTG
CGCGTGAAGCAGTCAACGGAAGTCGTACTTGACTCCCTTTTCGAAGGGGT
TGACGACGCCGGGCCGTTTGTGGTTCGCTTCGAGGTGACCATCACAAGGT
GCCACCCTGAAGATTTGGAAGCCAGCAGCGCGAACGCCCTGCAGCTGTGC
GCGCCGGCGATCCGCGAGGTGATGAATAAAGAGGGAGTCATGGAGCGCGA
GATGCACGAGATCGTGTTCGTTGGGAGGCCTATGTGGGAGCTAGTTTCTC
CCGTCCTCGACCTTGTGCCACCCTGAAGATTTGGAAGCCAGCAGCGCGAA
CGCCCTGCAGCTGTGCGCGCCGGCGATCCGCGAGGTGATGAATAAAGAGG
GAGTCATGGAGCGCGAGATGCACGAGATCGTGTTCGTTGGGAGGCCTATG
TGGGAGCTAGTTTCTCCCGTCCTCGACCTT
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