mRNA_H-elongata_contig20475.5831.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20475.5831.1
Unique NamemRNA_H-elongata_contig20475.5831.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20475.5831.1 vs. uniprot
Match: D7FIA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA2_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.930e-16
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 DHCQAAVTHVRSQAMAVRKTTAEYLRGELLRGEHVTSGDPKW 129
            +HC AAVTHVRS+A A+RKTT+EYL+GELLRGE +T+GDPKW
Sbjct:    2 EHCNAAVTHVRSKAAAIRKTTSEYLKGELLRGERLTNGDPKW 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20475.5831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIA2_ECTSI5.930e-1676.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20475contigH-elongata_contig20475:73..204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001140.1
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.2052305-CDS-H-elongata_contig20475:72..2041622930148.2052305-CDS-H-elongata_contig20475:72..204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20475 73..204 -
1691679299.395832-CDS-H-elongata_contig20475:72..2041691679299.395832-CDS-H-elongata_contig20475:72..204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20475 73..204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20475.5831.1prot_H-elongata_contig20475.5831.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20475 73..204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20475.5831.1

>prot_H-elongata_contig20475.5831.1 ID=prot_H-elongata_contig20475.5831.1|Name=mRNA_H-elongata_contig20475.5831.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
QDHCQAAVTHVRSQAMAVRKTTAEYLRGELLRGEHVTSGDPKW*
back to top

mRNA from alignment at H-elongata_contig20475:73..204-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20475.5831.1 ID=mRNA_H-elongata_contig20475.5831.1|Name=mRNA_H-elongata_contig20475.5831.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig20475:73..204- (Himanthalia elongata Himel1 dioecious)
CAGGATCACTGTCAAGCAGCTGTCACACATGTCAGGTCTCAGGCCATGGC
AGTTCGAAAAACAACGGCGGAGTACCTGAGGGGGGAACTTCTCCGTGGCG
AGCACGTTACAAGCGGAGATCCGAAGTGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20475:73..204-

>mRNA_H-elongata_contig20475.5831.1 ID=mRNA_H-elongata_contig20475.5831.1|Name=mRNA_H-elongata_contig20475.5831.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig20475:73..204- (Himanthalia elongata Himel1 dioecious)
CAGGATCACTGTCAAGCAGCTGTCACACATGTCAGGTCTCAGGCCATGGC
AGTTCGAAAAACAACGGCGGAGTACCTGAGGGGGGAACTTCTCCGTGGCG
AGCACGTTACAAGCGGAGATCCGAAGTGGTGACAGGATCACTGTCAAGCA
GCTGTCACACATGTCAGGTCTCAGGCCATGGCAGTTCGAAAAACAACGGC
GGAGTACCTGAGGGGGGAACTTCTCCGTGGCGAGCACGTTACAAGCGGAG
ATCCGAAGTGGTGA
back to top