mRNA_H-elongata_contig204697.5830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204697.5830.1
Unique NamemRNA_H-elongata_contig204697.5830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204697.5830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204697contigH-elongata_contig204697:3..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size515
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204697.5830.1prot_H-elongata_contig204697.5830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204697 3..933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.1229966-CDS-H-elongata_contig204697:2..2501622930148.1229966-CDS-H-elongata_contig204697:2..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204697 3..250 +
1691679299.3678641-CDS-H-elongata_contig204697:2..2501691679299.3678641-CDS-H-elongata_contig204697:2..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204697 3..250 +
1622930148.1482856-CDS-H-elongata_contig204697:494..6991622930148.1482856-CDS-H-elongata_contig204697:494..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204697 495..699 +
1691679299.3780086-CDS-H-elongata_contig204697:494..6991691679299.3780086-CDS-H-elongata_contig204697:494..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204697 495..699 +
1622930148.1618123-CDS-H-elongata_contig204697:873..9331622930148.1618123-CDS-H-elongata_contig204697:873..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204697 874..933 +
1691679299.3862019-CDS-H-elongata_contig204697:873..9331691679299.3862019-CDS-H-elongata_contig204697:873..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204697 874..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204697.5830.1

>prot_H-elongata_contig204697.5830.1 ID=prot_H-elongata_contig204697.5830.1|Name=mRNA_H-elongata_contig204697.5830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
EYRRTILAVKKIQTFWRGAAALAFYRKQIGAVISVQSRWRCAVARSRYRR
SVAASIVIQATVRCALAFAEYRRTISAVQRIQMWWRLKQNEAAACTAIAA
WWRSVRGVERFRRTRDIVVALQSIFRGRRTRREVGALGRRFSRYRAAKMI
QAALRGMSVRRAACRQIAVAR
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mRNA from alignment at H-elongata_contig204697:3..934+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204697.5830.1 ID=mRNA_H-elongata_contig204697.5830.1|Name=mRNA_H-elongata_contig204697.5830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig204697:3..934+ (Himanthalia elongata Himel1 dioecious)
GAATATCGCCGAACAATCTTGGCGGTGAAAAAGATCCAGACCTTTTGGCG
TGGCGCAGCTGCCTTGGCGTTCTATCGCAAACAGATCGGCGCCGTCATTT
CCGTTCAGTCCAGGTGGAGATGTGCCGTGGCGAGATCCCGATACCGTCGA
AGCGTTGCGGCATCAATTGTCATCCAAGCCACTGTTCGCTGTGCTCTGGC
GTTTGCGGAATATCGCCGAACAATTTCTGCCGTACAAAGGATCCAGATGT
AAGAGTGGTCTACATGTCCGTTTTGGAGTTTGCAAGAAAAACACAAATTG
TTTTTTCTAATGATTAGCAACCAATTCAAGGTCAAGTCACAATTTAAAGG
TTATAACATGTGACGTCAATCCGTTTCATTTTAGGATATCTTACCTTAAA
TACTTCTACTAATTTCTTTTTTTGCCGGACCTCATTTTAAGCCGCCATTG
AAGACCCCAAAAACCCATCGACTTTTTAACGTACGTGTATAGGTGGTGGC
GATTGAAACAAAACGAAGCCGCTGCATGCACAGCAATCGCTGCATGGTGG
CGGTCTGTGCGTGGCGTAGAGCGATTCCGCCGGACGCGCGATATCGTCGT
GGCCCTTCAGAGCATCTTTCGCGGTAGGCGCACTCGGCGAGAGGTTGGCG
CCCTCGGCCGTCGTTTCTCGAGATACAGGGCCGCGAAGATGATCCAGGTG
CACGCACGCTGACGTAGGTGTCACGTTTTTGGTCTGATGCATTAAGATGG
TACACCCCATAGTACTTCCGAGAGCATTTGGGAGAGAACCGTACCTCCGC
TAAATGGCAGTTAGCTTTGCTTTGATTCTAATTTGTCATTTTTTTTGTGC
CGGAAATGTTGTCTTGTTCAGGCGGCGTTGCGAGGAATGTCTGTGAGACG
CGCAGCGTGCCGTCAAATAGCGGTCGCCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig204697:3..934+

>mRNA_H-elongata_contig204697.5830.1 ID=mRNA_H-elongata_contig204697.5830.1|Name=mRNA_H-elongata_contig204697.5830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig204697:3..934+ (Himanthalia elongata Himel1 dioecious)
GAATATCGCCGAACAATCTTGGCGGTGAAAAAGATCCAGACCTTTTGGCG
TGGCGCAGCTGCCTTGGCGTTCTATCGCAAACAGATCGGCGCCGTCATTT
CCGTTCAGTCCAGGTGGAGATGTGCCGTGGCGAGATCCCGATACCGTCGA
AGCGTTGCGGCATCAATTGTCATCCAAGCCACTGTTCGCTGTGCTCTGGC
GTTTGCGGAATATCGCCGAACAATTTCTGCCGTACAAAGGATCCAGATGA
ATATCGCCGAACAATCTTGGCGGTGAAAAAGATCCAGACCTTTTGGCGTG
GCGCAGCTGCCTTGGCGTTCTATCGCAAACAGATCGGCGCCGTCATTTCC
GTTCAGTCCAGGTGGAGATGTGCCGTGGCGAGATCCCGATACCGTCGAAG
CGTTGCGGCATCAATTGTCATCCAAGCCACTGTTCGCTGTGCTCTGGCGT
TTGCGGAATATCGCCGAACAATTTCTGCCGTACAAAGGATCCAGATGTGG
TGGCGATTGAAACAAAACGAAGCCGCTGCATGCACAGCAATCGCTGCATG
GTGGCGGTCTGTGCGTGGCGTAGAGCGATTCCGCCGGACGCGCGATATCG
TCGTGGCCCTTCAGAGCATCTTTCGCGGTAGGCGCACTCGGCGAGAGGTT
GGCGCCCTCGGCCGTCGTTTCTCGAGATACAGGGCCGCGAAGATGATCCA
GGTGGTGGCGATTGAAACAAAACGAAGCCGCTGCATGCACAGCAATCGCT
GCATGGTGGCGGTCTGTGCGTGGCGTAGAGCGATTCCGCCGGACGCGCGA
TATCGTCGTGGCCCTTCAGAGCATCTTTCGCGGTAGGCGCACTCGGCGAG
AGGTTGGCGCCCTCGGCCGTCGTTTCTCGAGATACAGGGCCGCGAAGATG
ATCCAGGCGGCGTTGCGAGGAATGTCTGTGAGACGCGCAGCGTGCCGTCA
AATAGCGGTCGCCCGAGCGGCGTTGCGAGGAATGTCTGTGAGACGCGCAG
CGTGCCGTCAAATAGCGGTCGCCCGA
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