mRNA_H-elongata_contig203798.5798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203798.5798.1
Unique NamemRNA_H-elongata_contig203798.5798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: D8LNT7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT7_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 5.930e-36
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 ERRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYS 258
            ERRVFAVDMRNHG SSHHD+MTY +MA+DVLGFLAD+       GLS+AVL+GHSMGGKAAAMTALLHP  V+GLVVMDIAPVSYS
Sbjct:  145 ERRVFAVDMRNHGASSHHDSMTYVDMANDVLGFLADK-------GLSEAVLIGHSMGGKAAAMTALLHPQVVKGLVVMDIAPVSYS 223          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: A0A836CHF5_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.230e-27
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    4 RRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYS 258
            RRVFAVDMRNHG SSHH +MTY +MA D++ F+          GL +AVLVGHSMGGK A MTALLHP  V+GLVVMDIAPV YS
Sbjct:  129 RRVFAVDMRNHGASSHHASMTYPDMAGDIVAFMEQR-------GLGKAVLVGHSMGGKVACMTALLHPERVQGLVVMDIAPVPYS 206          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: A0A7S2V5V8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 8.010e-23
Identity = 47/86 (54.65%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 ERRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYS 258
            +R++F VD RNHG S H D M Y +M DD+L F   +       G+ +A+LVGHSMGGK A   ALLHP  V GLVVMDIAPV Y 
Sbjct:   42 QRKIFIVDQRNHGNSGHSDGMRYTDMVDDLLEFYEQQ-------GIDEAILVGHSMGGKTAMALALLHPQKVAGLVVMDIAPVPYG 120          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: A0A4R4ZQV2_9ACTN (Alpha/beta fold hydrolase n=1 Tax=Kribbella antibiotica TaxID=190195 RepID=A0A4R4ZQV2_9ACTN)

HSP 1 Score: 90.5 bits (223), Expect = 3.000e-20
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 ERRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESA-SPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSY 255
            + RVFA+D+RNHGTS H DTM+Y EMADDV        RE+  S G     LVGHSMGGKAA +TALL+P  V  LVV+D APV+Y
Sbjct:   38 QHRVFALDLRNHGTSPHVDTMSYPEMADDV--------RETIESLGAGPVTLVGHSMGGKAAMLTALLYPAVVERLVVVDAAPVTY 115          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: UPI0015D4E6A7 (alpha/beta fold hydrolase n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4E6A7)

HSP 1 Score: 90.5 bits (223), Expect = 3.220e-20
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    4 RRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYS 258
            +RV+A+D+RNHG+S    TM+Y EMADDVL FL D        G  +AV+VGHSMGGKAA   AL HP  V  LVV+DIAPV+Y+
Sbjct:   45 QRVYALDLRNHGSSPWAPTMSYPEMADDVLRFLDDR-------GFRRAVVVGHSMGGKAAMTLALNHPERVERLVVVDIAPVAYT 122          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: A0A7S0AM27_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AM27_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.620e-20
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 ERRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYST 261
            +RR+ AVD+RNHG S H D+M+Y   A D+L  +  E       G+ +AVLVGHSMGGK     ALLHP  V GLVVMDI+PV Y T
Sbjct:  120 KRRIIAVDLRNHGESGHADSMSYTAQAQDLLKVMDRE-------GMEEAVLVGHSMGGKVVKAAALLHPDRVAGLVVMDISPVRYET 199          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: A0A2U1VIE4_9PROT (Esterase n=1 Tax=Azospirillum sp. TSO35-2 TaxID=716796 RepID=A0A2U1VIE4_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 1.780e-19
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    4 RRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYS 258
            RRV+A+D+RNHG +   D M+Y EMADDVL FL D        G ++A +VGHSMGGK A   AL HP  V  LVV+DIAPV+Y+
Sbjct:   46 RRVYALDLRNHGGAPWDDGMSYPEMADDVLRFLDDR-------GFARATVVGHSMGGKTAMALALAHPERVERLVVVDIAPVAYT 123          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: A0A4R2CCD8_9ACTN (Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax=unclassified Kribbella TaxID=2644121 RepID=A0A4R2CCD8_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 3.180e-19
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 ERRVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSY 255
            E RVFA D+RNHGTS H DTM+Y EMA+DV   ++       S G+    LVGHSMGGK A +TAL H   V  LVV+D APVSY
Sbjct:   38 EHRVFAFDLRNHGTSPHTDTMSYPEMAEDVYETIS-------SLGVGPVALVGHSMGGKTAMLTALRHAAVVERLVVVDAAPVSY 115          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: UPI001AE15BF3 (alpha/beta fold hydrolase n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001AE15BF3)

HSP 1 Score: 87.8 bits (216), Expect = 3.450e-19
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    7 RVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSYS 258
            RV+A+D+RNHG S   D+MTY EMADDVL FL D        G ++A +VGHSMGGK A   AL HP  V  L+V DIAPV+Y+
Sbjct:   46 RVYALDLRNHGGSPWSDSMTYPEMADDVLRFLDDR-------GFARAAVVGHSMGGKTAMTLALKHPDRVERLLVADIAPVTYT 122          
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Match: D2Q263_KRIFD (Alpha/beta hydrolase fold protein n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) TaxID=479435 RepID=D2Q263_KRIFD)

HSP 1 Score: 87.4 bits (215), Expect = 4.460e-19
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 RVFAVDMRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASP-GLSQAVLVGHSMGGKAAAMTALLHPHAVRGLVVMDIAPVSY 255
            RVFA D+RNHGTS H  TM+Y E+ADDV        RE+    G+    LVGHSMGGKAA +TAL HP  V  LVV+D APVSY
Sbjct:   40 RVFAFDLRNHGTSPHVPTMSYPELADDV--------RETVEGLGVGPVALVGHSMGGKAAMLTALTHPEVVERLVVVDAAPVSY 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203798.5798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT7_ECTSI5.930e-3679.07AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A836CHF5_9STRA1.230e-2767.06Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S2V5V8_9STRA8.010e-2354.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4R4ZQV2_9ACTN3.000e-2059.30Alpha/beta fold hydrolase n=1 Tax=Kribbella antibi... [more]
UPI0015D4E6A73.220e-2057.65alpha/beta fold hydrolase n=1 Tax=Azospirillum ole... [more]
A0A7S0AM27_9STRA8.620e-2054.02Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A2U1VIE4_9PROT1.780e-1955.29Esterase n=1 Tax=Azospirillum sp. TSO35-2 TaxID=71... [more]
A0A4R2CCD8_9ACTN3.180e-1956.47Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax... [more]
UPI001AE15BF33.450e-1955.95alpha/beta fold hydrolase n=1 Tax=Azospirillum rug... [more]
D2Q263_KRIFD4.460e-1958.33Alpha/beta hydrolase fold protein n=1 Tax=Kribbell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203798contigH-elongata_contig203798:209..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D8LNT7
KEGG koko:K13703
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0596@1,KOG2382@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-08_005850.1
Exons2
Model size264
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203798.5798.1prot_H-elongata_contig203798.5798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203798 209..699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.2786622-CDS-H-elongata_contig203798:208..3401622930145.2786622-CDS-H-elongata_contig203798:208..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203798 209..340 -
1691679298.3409631-CDS-H-elongata_contig203798:208..3401691679298.3409631-CDS-H-elongata_contig203798:208..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203798 209..340 -
1622930145.290704-CDS-H-elongata_contig203798:591..6991622930145.290704-CDS-H-elongata_contig203798:591..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203798 592..699 -
1691679298.3507988-CDS-H-elongata_contig203798:591..6991691679298.3507988-CDS-H-elongata_contig203798:591..699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203798 592..699 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.3082337-UTR-H-elongata_contig203798:699..7231622930145.3082337-UTR-H-elongata_contig203798:699..723Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig203798 700..723 -
1691679298.3587658-UTR-H-elongata_contig203798:699..7231691679298.3587658-UTR-H-elongata_contig203798:699..723Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig203798 700..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203798.5798.1

>prot_H-elongata_contig203798.5798.1 ID=prot_H-elongata_contig203798.5798.1|Name=mRNA_H-elongata_contig203798.5798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MRNHGTSSHHDTMTYAEMADDVLGFLADEVRESASPGLSQAVLVGHSMGG
KAAAMTALLHPHAVRGLVVMDIAPVSYST*
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mRNA from alignment at H-elongata_contig203798:209..723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203798.5798.1 ID=mRNA_H-elongata_contig203798.5798.1|Name=mRNA_H-elongata_contig203798.5798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at H-elongata_contig203798:209..723- (Himanthalia elongata Himel1 dioecious)
GAGAGAAGAGTGTTCGCGGTTGACATGCGAAACCACGGAACCAGCTCTCA TCACGACACGATGACGTACGCCGAGATGGCCGACGACGTGTTGGGTTTCC TCGCGGACGAGGTAAGGGAGTCTGCGTCTCCAGTCGCCGGTCATGAAGCT ACGTGTGATGTTCCACATGGCCTTCGAGGGGCTACGAAGGAGACGTCCCT GCTTCCCGAGCGGTATCGTCTCTAAAAACACGCTGAGTTGATCAGCGCAA GACAGCCGCGTATAGTCCTCTCGCGAAAAGGAAAAACGATCCGACACCTC CTGGCGGGGGCCATACCGATGAACGATTGTGTCGCTGTCAAGATGACCGT TTGTGTTGCTGTTTGGTTTATTTTGCCATCAAGGGGTTGTCCCAGGCAGT TCTGGTAGGGCACAGCATGGGCGGGAAGGCTGCCGCTATGACCGCGCTCC TGCATCCGCACGCGGTCAGGGGACTTGTCGTCATGGACATCGCGCCCGTG AGCTATTCCACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig203798:209..723-

>mRNA_H-elongata_contig203798.5798.1 ID=mRNA_H-elongata_contig203798.5798.1|Name=mRNA_H-elongata_contig203798.5798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig203798:209..723- (Himanthalia elongata Himel1 dioecious)
ATGCGAAACCACGGAACCAGCTCTCATCACGACACGATGACGTACGCCGA
GATGGCCGACGACGTGTTGGGTTTCCTCGCGGACGAGGTAAGGGAGTCTG
CGTCTCCAATGCGAAACCACGGAACCAGCTCTCATCACGACACGATGACG
TACGCCGAGATGGCCGACGACGTGTTGGGTTTCCTCGCGGACGAGGTAAG
GGAGTCTGCGTCTCCAGGGTTGTCCCAGGCAGTTCTGGTAGGGCACAGCA
TGGGCGGGAAGGCTGCCGCTATGACCGCGCTCCTGCATCCGCACGCGGTC
AGGGGACTTGTCGTCATGGACATCGCGCCCGTGAGCTATTCCACGTGAGG
GTTGTCCCAGGCAGTTCTGGTAGGGCACAGCATGGGCGGGAAGGCTGCCG
CTATGACCGCGCTCCTGCATCCGCACGCGGTCAGGGGACTTGTCGTCATG
GACATCGCGCCCGTGAGCTATTCCACGTGA
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