mRNA_H-elongata_contig20376.5797.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20376.5797.1
Unique NamemRNA_H-elongata_contig20376.5797.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A6H5KW74_9PHAE (Ribokinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KW74_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.830e-45
Identity = 84/139 (60.43%), Postives = 102/139 (73.38%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGA-------NSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLPDR 396
            QAVMA RMG  VAMV C+G+DS+G+ Y++ L  +GIDC  V R    ATGVAQICVE+  G+       N IVIVPGANY LS  DVA+A  +L  A+++MCQ+E+RPE  L ALERGRAAGM T+FNPAPAQ+ LPDR
Sbjct:  101 QAVMARRMGVGVAMVACLGDDSYGTDYVKSLCDDGIDCGSVRRDAGAATGVAQICVEEADGSEGXXXXXNFIVIVPGANYLLSPEDVATATNRLKDAKIIMCQSEVRPEATLAALERGRAAGMTTIFNPAPAQADLPDR 239          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A7S4DH79_HETAK (Ribokinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH79_HETAK)

HSP 1 Score: 120 bits (300), Expect = 3.320e-30
Identity = 71/131 (54.20%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLPD 393
            QAVMASRMGAKV  +G +G DSFG SY+  L  EGIDC  V R +  +TGVAQICV D  G N IV+VPGAN  +    V +AA  L GA V++CQ EI  E  L AL+ G+  G+IT+ N APA   LP+
Sbjct:  124 QAVMASRMGAKVGFIGALGSDSFGDSYMVHLESEGIDCRHVARVEG-STGVAQICV-DREGQNFIVVVPGANGRVDAAAVGAAAPLLAGAWVVVCQGEIPTEGTLAALQLGKQQGLITILNTAPADPNLPE 252          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: I2DLY3_9BURK (Ribokinase n=25 Tax=Burkholderia TaxID=32008 RepID=I2DLY3_9BURK)

HSP 1 Score: 111 bits (278), Expect = 3.260e-27
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQ 378
            QAV A+R+GA VAM+GC+G D+FG+   + L  E ID + V+R    ATGVA I V D  GANSIV+VPGAN  L    + +A   + GA +M+CQ E+  E ++ A++R RA G   L NPAPA+
Sbjct:   50 QAVAAARLGASVAMIGCVGNDAFGARLHDALAAERIDVTHVHRIDGAATGVATITV-DASGANSIVVVPGANARLDAATIDAARDAIAGAALMVCQLEVPMETVVRAIDRARACGTPVLLNPAPAR 174          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A0X8EXU5_PSEFR (Ribokinase n=6 Tax=Pseudomonas TaxID=286 RepID=A0A0X8EXU5_PSEFR)

HSP 1 Score: 109 bits (272), Expect = 2.360e-26
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLP 390
            QAV A+R+GA VAMVGC+G D++G    E L  EGIDC  V      A+GVA I V DT   N+IV+VPGAN  L   D+ +    L GA+V++CQ E+  + +   L+RGR    I + NPAPA   LP
Sbjct:   45 QAVAAARLGASVAMVGCVGTDAYGVQLREGLEAEGIDCQAVRAVAQGASGVALIVV-DTDSQNTIVVVPGANGCLDAQDIMTVDGMLQGAKVIICQLEVPMDTVGHVLKRGRELDKIVVLNPAPASGPLP 173          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: UPI0005D8309F (PfkB family carbohydrate kinase n=2 Tax=Burkholderia vietnamiensis TaxID=60552 RepID=UPI0005D8309F)

HSP 1 Score: 111 bits (278), Expect = 3.880e-26
Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQ 378
            QAV A+R+GA VAM+GC+G D+FG+   + L  E ID + V+R    ATGVA I V D  GANSIV+VPGAN  L    + +A   + GA +M+CQ E+  E ++ A++R RA G   L NPAPA+
Sbjct:   50 QAVAAARLGASVAMIGCVGNDAFGARLHDALAAERIDLTHVHRIDGAATGVATITV-DASGANSIVVVPGANARLDAATIDAARDAIAGAALMVCQLEVPMETVVRAIDRARACGTPVLLNPAPAR 174          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A553H4U9_9PSED (Ribokinase n=1 Tax=Pseudomonas mangiferae TaxID=2593654 RepID=A0A553H4U9_9PSED)

HSP 1 Score: 108 bits (270), Expect = 4.640e-26
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLP 390
            QAV A+R+GA+VAMVGC+G+D++G+     L  EGIDCS +    D ++GVA I V+D    N+IV++PGAN  LS   V +    L GA++++CQ EI    +   L RG A G   + NPAPA   LP
Sbjct:   45 QAVAAARLGARVAMVGCVGDDAYGAQLRTGLEAEGIDCSALAEVADCSSGVALIVVDDNS-QNAIVVIPGANGELSASRVEALDAVLQGAQILICQLEIPSLTVAHVLCRGHALGKTVILNPAPASEALP 173          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A8C4YX78_GADMO (Ribokinase n=3 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4YX78_GADMO)

HSP 1 Score: 107 bits (266), Expect = 1.990e-25
Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTL 387
            Q + A+++GA+ AMVG +G+D FG SY++     G++ +CV++  DVATG A I V D G  N+IVIV GAN  L   ++ ++   L    V++CQ EIRPE  L+AL   R   + T+FNPAPA   L
Sbjct:   48 QCIQAAKLGARTAMVGKVGKDFFGDSYIQNFKDNGVNTACVFQAPDVATGAASIVVNDAG-ENAIVIVAGANLLLGAAELQASLPALSRTTVLLCQLEIRPECSLQALRTARQHNVKTIFNPAPAVPDL 175          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: UPI0005AB6EA0 (ribokinase n=1 Tax=Paraburkholderia bannensis TaxID=765414 RepID=UPI0005AB6EA0)

HSP 1 Score: 106 bits (264), Expect = 2.800e-25
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLPD 393
            QAV A+R+GA+VAM+GC+G D+ G      L  EGIDC  +    DV TGVA I V+D    N+IVIV G+N A++   +A     L  A+V++CQ E  P+ +L AL   RA G IT+ NPAPA   LPD
Sbjct:   33 QAVAAARLGAQVAMIGCVGADANGERLRAGLLAEGIDCGALDTSPDVPTGVALIVVDDAS-QNAIVIVAGSNGAVTPATLARHEAVLAAAQVVVCQLETPPQAVLAALTTARALGKITILNPAPAIGPLPD 162          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: R1CT03_9FIRM (Ribokinase n=1 Tax=Caldisalinibacter kiritimatiensis TaxID=1304284 RepID=R1CT03_9FIRM)

HSP 1 Score: 106 bits (264), Expect = 3.410e-25
Identity = 51/127 (40.16%), Postives = 88/127 (69.29%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQS 381
            QAV A+R+GAKV+M+G +G+D FG + ++ +  +GID   + R+++ +TGVA I V D G  NSIV++PGAN+ ++  D+  A   ++G+++++ Q EI  +V+  +L++ +  G  T+ NPAPAQ+
Sbjct:   44 QAVAAARLGAKVSMIGKVGDDGFGKNLMDSMNSDGIDTKYIKREENTSTGVALITVNDEGD-NSIVVIPGANFKVTKEDIDKATEAIEGSKIVLLQLEIPIDVVKYSLKKAKTLGKYTILNPAPAQN 169          
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: UPI001AAD94DE (ribokinase n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD94DE)

HSP 1 Score: 105 bits (262), Expect = 7.560e-25
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTL 387
            Q V A+R+GA+ AMV  +GEDSFGS+Y+E      +    V +    ATG A I V +  G N+IVIV GAN  L + D+A A+  + GARVM+CQ EI P+V LEAL+    +G+ T+FNPAPA + L
Sbjct:   46 QCVQAARLGARTAMVCKVGEDSFGSNYIENFRNNDVCTDFVAQTAAAATGAASIIV-NAEGQNAIVIVAGANLLLDSGDLARASEAICGARVMVCQLEISPQVSLEALKMAHNSGVKTIFNPAPAVAVL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW74_9PHAE2.830e-4560.43Ribokinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A7S4DH79_HETAK3.320e-3054.20Ribokinase (Fragment) n=1 Tax=Heterosigma akashiwo... [more]
I2DLY3_9BURK3.260e-2748.41Ribokinase n=25 Tax=Burkholderia TaxID=32008 RepID... [more]
A0A0X8EXU5_PSEFR2.360e-2646.92Ribokinase n=6 Tax=Pseudomonas TaxID=286 RepID=A0A... [more]
UPI0005D8309F3.880e-2648.41PfkB family carbohydrate kinase n=2 Tax=Burkholder... [more]
A0A553H4U9_9PSED4.640e-2645.38Ribokinase n=1 Tax=Pseudomonas mangiferae TaxID=25... [more]
A0A8C4YX78_GADMO1.990e-2544.19Ribokinase n=3 Tax=Gadus morhua TaxID=8049 RepID=A... [more]
UPI0005AB6EA02.800e-2547.33ribokinase n=1 Tax=Paraburkholderia bannensis TaxI... [more]
R1CT03_9FIRM3.410e-2540.16Ribokinase n=1 Tax=Caldisalinibacter kiritimatiens... [more]
UPI001AAD94DE7.560e-2548.06ribokinase n=1 Tax=Rana temporaria TaxID=8407 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20376contigH-elongata_contig20376:5968..6521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue7.7e-35
Seed eggNOG ortholog2880.D7FNJ4
Preferred nameRBKS
KEGG rclassRC00002,RC00017
KEGG koko:K00852
KEGG ReactionR01051,R02750
KEGG Pathwayko00030,map00030
GOsGO:0003674,GO:0003824,GO:0004747,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0046835,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.carbohydrate kinase activity
EggNOG OGsCOG0524@1,KOG2855@2759
EC2.7.1.15
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20376.5797.1prot_H-elongata_contig20376.5797.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20376 5977..6521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.2031465-UTR-H-elongata_contig20376:5967..59761622930145.2031465-UTR-H-elongata_contig20376:5967..5976Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20376 5968..5976 +
1691679298.3056831-UTR-H-elongata_contig20376:5967..59761691679298.3056831-UTR-H-elongata_contig20376:5967..5976Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20376 5968..5976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.2196472-CDS-H-elongata_contig20376:5976..62491622930145.2196472-CDS-H-elongata_contig20376:5976..6249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20376 5977..6249 +
1691679298.3178604-CDS-H-elongata_contig20376:5976..62491691679298.3178604-CDS-H-elongata_contig20376:5976..6249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20376 5977..6249 +
1622930145.2312615-CDS-H-elongata_contig20376:6407..65211622930145.2312615-CDS-H-elongata_contig20376:6407..6521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20376 6408..6521 +
1691679298.3278046-CDS-H-elongata_contig20376:6407..65211691679298.3278046-CDS-H-elongata_contig20376:6407..6521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20376 6408..6521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20376.5797.1

>prot_H-elongata_contig20376.5797.1 ID=prot_H-elongata_contig20376.5797.1|Name=mRNA_H-elongata_contig20376.5797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQ
ICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEV
ILEALERGRAAGMITLFNPAPAQSTLPDR
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mRNA from alignment at H-elongata_contig20376:5968..6521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20376.5797.1 ID=mRNA_H-elongata_contig20376.5797.1|Name=mRNA_H-elongata_contig20376.5797.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=554bp|location=Sequence derived from alignment at H-elongata_contig20376:5968..6521+ (Himanthalia elongata Himel1 dioecious)
CAGGCAGTTATGGCGAGTCGGATGGGAGCTAAAGTCGCCATGGTGGGATG TATGGGGGAAGATTCCTTCGGATCGAGCTATCTGGAGAGGCTTGGAGTCG AAGGGATCGACTGCAGTTGCGTGTATCGTAAGCAAGACGTGGCGACGGGC GTCGCCCAGATTTGTGTGGAGGACACCGGCGGAGCCAACTCCATCGTGAT CGTGCCAGGAGCCAATTACGCGCTTTCGACGATGGACGTAGCCTCGGCAG CGAGGAAGCTGGACGGCGCGAGGGTGATGATGGTGAGAGAGCGATAGCTG ATCTATCCTCCGTGTTGACCGGTGGCCTCGTTATTTCGAGCAGCGGTGAT CTCCCATCTTGATCTCGCCGCCGATGCTTGTGTGTGTGTTGAAACAGTAC TGTAACCATACACCTACCCACCCGTGTCTCGTGAAGGCAGTGCCAAGCGG AGATCCGACCGGAGGTGATCCTCGAGGCCCTGGAGCGCGGTCGTGCCGCA GGGATGATCACGCTGTTTAACCCAGCCCCGGCACAATCCACTCTTCCCGA CAGG
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Coding sequence (CDS) from alignment at H-elongata_contig20376:5968..6521+

>mRNA_H-elongata_contig20376.5797.1 ID=mRNA_H-elongata_contig20376.5797.1|Name=mRNA_H-elongata_contig20376.5797.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig20376:5968..6521+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAGTCGGATGGGAGCTAAAGTCGCCATGGTGGGATGTATGGGGGA
AGATTCCTTCGGATCGAGCTATCTGGAGAGGCTTGGAGTCGAAGGGATCG
ACTGCAGTTGCGTGTATCGTAAGCAAGACGTGGCGACGGGCGTCGCCCAG
ATTTGTGTGGAGGACACCGGCGGAGCCAACTCCATCGTGATCGTGCCAGG
AGCCAATTACGCGCTTTCGACGATGGACGTAGCCTCGGCAGCGAGGAAGC
TGGACGGCGCGAGGGTGATGATGATGGCGAGTCGGATGGGAGCTAAAGTC
GCCATGGTGGGATGTATGGGGGAAGATTCCTTCGGATCGAGCTATCTGGA
GAGGCTTGGAGTCGAAGGGATCGACTGCAGTTGCGTGTATCGTAAGCAAG
ACGTGGCGACGGGCGTCGCCCAGATTTGTGTGGAGGACACCGGCGGAGCC
AACTCCATCGTGATCGTGCCAGGAGCCAATTACGCGCTTTCGACGATGGA
CGTAGCCTCGGCAGCGAGGAAGCTGGACGGCGCGAGGGTGATGATGTGCC
AAGCGGAGATCCGACCGGAGGTGATCCTCGAGGCCCTGGAGCGCGGTCGT
GCCGCAGGGATGATCACGCTGTTTAACCCAGCCCCGGCACAATCCACTCT
TCCCGACAGGTGCCAAGCGGAGATCCGACCGGAGGTGATCCTCGAGGCCC
TGGAGCGCGGTCGTGCCGCAGGGATGATCACGCTGTTTAACCCAGCCCCG
GCACAATCCACTCTTCCCGACAGG
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