mRNA_H-elongata_contig20375.5796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20375.5796.1
Unique NamemRNA_H-elongata_contig20375.5796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20375.5796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20375contigH-elongata_contig20375:387..6917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008670.1
Exons5
Model size1713
Cds size525
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.0585356-UTR-H-elongata_contig20375:386..4551622930145.0585356-UTR-H-elongata_contig20375:386..455Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20375 387..455 +
1691679298.222792-UTR-H-elongata_contig20375:386..4551691679298.222792-UTR-H-elongata_contig20375:386..455Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20375 387..455 +
1622930145.1487486-UTR-H-elongata_contig20375:5798..69171622930145.1487486-UTR-H-elongata_contig20375:5798..6917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20375 5799..6917 +
1691679298.2964938-UTR-H-elongata_contig20375:5798..69171691679298.2964938-UTR-H-elongata_contig20375:5798..6917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20375 5799..6917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.0735102-CDS-H-elongata_contig20375:455..5781622930145.0735102-CDS-H-elongata_contig20375:455..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 456..578 +
1691679298.2374413-CDS-H-elongata_contig20375:455..5781691679298.2374413-CDS-H-elongata_contig20375:455..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 456..578 +
1622930145.0861504-CDS-H-elongata_contig20375:2937..30071622930145.0861504-CDS-H-elongata_contig20375:2937..3007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 2938..3007 +
1691679298.2526872-CDS-H-elongata_contig20375:2937..30071691679298.2526872-CDS-H-elongata_contig20375:2937..3007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 2938..3007 +
1622930145.098044-CDS-H-elongata_contig20375:3253..33891622930145.098044-CDS-H-elongata_contig20375:3253..3389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 3254..3389 +
1691679298.2687511-CDS-H-elongata_contig20375:3253..33891691679298.2687511-CDS-H-elongata_contig20375:3253..3389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 3254..3389 +
1622930145.11825-CDS-H-elongata_contig20375:3783..39501622930145.11825-CDS-H-elongata_contig20375:3783..3950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 3784..3950 +
1691679298.2787333-CDS-H-elongata_contig20375:3783..39501691679298.2787333-CDS-H-elongata_contig20375:3783..3950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 3784..3950 +
1622930145.1330383-CDS-H-elongata_contig20375:5769..57981622930145.1330383-CDS-H-elongata_contig20375:5769..5798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 5770..5798 +
1691679298.2885263-CDS-H-elongata_contig20375:5769..57981691679298.2885263-CDS-H-elongata_contig20375:5769..5798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20375 5770..5798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20375.5796.1prot_H-elongata_contig20375.5796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20375 456..5798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20375.5796.1

>prot_H-elongata_contig20375.5796.1 ID=prot_H-elongata_contig20375.5796.1|Name=mRNA_H-elongata_contig20375.5796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MDHAAEPVTIVTAADQALAVNAEGENHCCGVPPTASTQVKATRMASVMII
VIHVIALFFGTIFWGQWVASLIAIVMGSIVLCHFNKYAYNAAAFLFLVAI
TFDVLSCYFWIMFAENSTDDGTDDDISEDETERTTKLFLISPAIGAVCLF
LGAIAAFTATCTWEKNRRGSPETP*
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mRNA from alignment at H-elongata_contig20375:387..6917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20375.5796.1 ID=mRNA_H-elongata_contig20375.5796.1|Name=mRNA_H-elongata_contig20375.5796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6531bp|location=Sequence derived from alignment at H-elongata_contig20375:387..6917+ (Himanthalia elongata Himel1 dioecious)
ACGCCACGAAGCTATCCTTGTGGATTATCTTTTCGAGAAGGTATCGTGCT
GGATACAAGAGCCAGCCAGATGGATCACGCCGCCGAGCCCGTGACTATTG
TTACGGCCGCTGACCAAGCGCTCGCCGTGAACGCCGAAGGCGAGAACCAT
TGTTGTGGTGTCCCGCCTACCGCTTCCACCCAAGTCAAAGCGGTAAGTTT
GGACTCACTCGTCGTGGATTTCAAGCGAGGATTTTACCCGTTCGTTGACC
TTTACCCGATTGTTCTGCATCTCCTTACTACCAGGTACTACGTCCTTACA
TAATCTCATGTACCTGTACCGTACTGGCTGGCCACAAATTAACATCTTAT
ATTATTTGATATGTTGTTCGATGATGACTATATTCATTCGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGCGGTGGTAGTTGGACTGACATTAGTGTTGT
GTGCCTTTGGATGGGATGACTTTCTAAATTAATCCAGACCGGCACATTAC
ACGGTTCAAAGCACATATAATAATGTGTCCTTTAGGCCAACTTTTTGAAA
ACAAGCCGAAATAGGCAGGGCGCTAGTCCTTCTTCTTTCAAAACATTTTT
CATCTATCTACTACTACGGATGATATTATTAGTCTCTAGGGTAGAGATTA
TATATATCGAAACAGAACACATCATCTCCAAGTAGTGTGCTATTATTAGC
TCTAGTAGTGTCGCAACAGGGTTCAGTGCACGTCCGTCCGTGCATAGATG
ATCAGTCCTGCACCAATAATGCACCACCGATCGATACAATAAGTCAACCG
ATCCATAGATTGCGGGATGCGCGCACGGTTCTCATCGACGTTGAGGTGTG
TTCGATTTTTAAATATAAATAAATATATTCAATGGTTGCAGTCGTATCCA
TTAGCTTTGAGCACTTTGATTTGATGATATTATGTATCATGGTTGATATT
TCGGGGCGATGTAACTGCTTTCTTCCCCGAGGTATAAAGAGCAAGACCAT
CGATCCATCTAGCGTTCGACACGTACAGAGCACGTGATGCGTGTTCACGA
GCGACTAAGAAGAAGGGAAGGGAAGAGAGGGAATGATCGGTTTTCATTGT
TCTACTTCGACGTTGGCCGAGAAAACGATTGTCGGCACGTGGTCGGTGGA
TTTCCAGCCCATAATAGTAGTAGTACCTTTGCCTGAGGGCAAATATTTTT
TTGGACCTACCGAAAATTGTGCTAGAGCTAGTGAAATGCAACATTTTCCG
GCGTTACCGTCCTGTAAGGAACTTCTTGACCTTTTTCGCCTAAGCGTCGA
TTGTTTGTCGGGTGTGCATGGGTACGAATTTGTGTAGTATACCAAAAATA
TGCACACGCATCTGCAAGGACACGAGGCAACATCCTCGGGTAAGCACCCT
CCACCTCTAGACCCCACTCGATCACACTCTCTGACCCAACAGGGGTGCCC
ACCTCGACTCCCCCCCCATACGGTCTCTCTTCTCCGAGTGGAATTTCAGC
CGACATCAGAAAACACTTTCTTCGGAGACAGCAGTACCTGCACGTCGTGC
GAAGACATCGAATTGTTTTGCATCTCTTCACGACGACCCAGTTGCAGACA
ATATCGTCGCTACCCGTTCCCCCCATCGCACTGACAGCAATTTGACCAAT
AGGCTCATCATTAGTATATTACGAAGTACTGCATTGTTCCCTGGATTGCA
CCTATGATGCAAGAAGGTGTGGATGTTCGGAGAGTTAGAATGAGGCTAAA
GTCTTTTACATAAAAATAATAATTTGCTTCATAATGCTAAGAGGCGCTGA
TCCATACCCAGAAATGTCTTGGAGAAAATAGATAATATGGGCAATTTCTC
CGTAGGAACCGTAACAAATCAACTCCCAAATCTCTCTGGTTTAGCCCCTT
CGTTGCTACCGACTACGTTTGTTTGTACCAAAAGTGTTGCCAAGGTGTGT
CCAGATACCACACCAGGCCTAATTTTCATCTACGATGCCGTTGGCGGTTT
ATTCGTGATAATAATAAATGGTTCATGACGAGTCAAGGTTTACAAGAGGA
TAAACTTTACATCATCTTCTGTCAAGTGTTTAAAATGTGCATTGTTTGTG
ACAACCTTTTCGTCTATTTAGAAGCAAGCGCGATCCATTAACATACTGAA
CAATATTGCGCAAGATTGCGACCGATAATTGAATATTATGCGGGGTCAGT
GTAAACTACGGGGTGCCTGCAACGTCTGTGGAACAGGTCGATTTAGGGGC
AATTTAAGGGATTTGGTGGGTAAATATGAGAAGCTCGGTGTAAATAGCGT
CTTCTGAAATCGTCATCAGTGCGTTGTGTAGGAATGTGATGCCCACTGTT
ACCGGTTCTTGTACAAGATATCCAAGACCTAAGATTGGACGTGGCCATCC
TCTCACTCACCCTCTACGCCTTAACCCGTCCTCTACAGATACTCTGCACA
GGTCCCAAAATTGCATGTCGTCCTCTGCTTACTACATTAAGCATAATGAC
ACCGCGCGCTGCCTACACGCCTTTGTTTGTTCTCTCTGCTCCGACTTTCA
GACGCGGATGGCATCTGTAATGATAATTGTTATCCATGTCATCGCCCTCT
TCTTTGGCACTATTTTTTGGGGTAAGAAAACATCATCGTCTTCCCTGCGT
TGTTTTCCGGGAACGATCCAATTCGTATTATAAGGGGACTTTAGGTGGTC
GGGTTCGTTCGGCTTGATGCAAGCAACTTATATGTGTGTTTGTTCTACTG
CTGGTTTCACGCGCGCATGTCCGAGGTGGCGTCAGCTCAATTGAGGTGGT
AGTTCGCTCGATATCTTTCTGAATATTCATGACCCATTCCCCGCCCCCCC
ATCTCTTTACGCGGAAGGGCAATGGGTTGCCTCTCTTATCGCCATTGTCA
TGGGCTCCATCGTTTTGTGTCATTTCAACAAGTACGCCTATAACGCGGCG
GCGTTTCTCTTCCTGGTCGCTATAACCTTCGATGTCTTATCGTGCTACTT
TTGGTGAGTTAGGCGAGCGCCGCAGCATTTTTCTCCTGGTGGACTGTACT
TGTTTGAGTACTATCGTTGGAATGGTCTACTTGCGAAGCGCTGCACCAAG
CTCCGAACGTTGTTCCAACGACTGACCCTTGTCGATCGCCGATGTAACTC
ATTTCGACCAGGACTCAGAGTATATAGCGGGAGGCAGTCGAAGAATAATA
CTAAAGGTAGTCTTTGATTAGAGAACTCCGCAACGTTTCAGCCATATTTG
TTTCGTGTATGCTGCGAGGAAGGTATCATTGAAAATATCTCACGTAAGTT
GCATTCGCCCTCCCTTACACACGATGGTGTTTCTAGAGAGAAGAATTATC
CCCTCTCTTGCCTAAGCAATATCATGATCTAATTGATTCTCGTCCAGGAT
TATGTTTGCTGAAAATTCAACTGACGATGGCACCGACGATGACATCAGCG
AGGATGAAACCGAAAGAACAACCAAGCTGTTTTTGATTTCCCCTGCCATT
GGGGCTGTGTGTCTCTTCCTTGGAGCCATCGCCGCATTTACGGCGACCTG
CACCTGGGAAAAGAGTGGCGCCCCCGACGCTGTGATAACTGTCGAGTGCA
GGTTAGGTTGTTGTTACGTCCCTAAGGGCTTCTGTCCAAGGATGGACACG
GATGGCACAAAATCGAGCTTTTTCATGCGCTTTTTAACCTTGTATAGAAT
GTAGCAGGGGGCAGAATGGTAGTTGGGAAAATAAAGGCGTACATTACTTG
GTTCATGGGGTTACCTGAATAGGCTGCACCCATTACTCAAGCTACCTTGA
GTACTATTGGTTCAGCGCCAGCGGATTCTCGGTAGTAAACGCCATCGGTG
CGCAATTGCGTCACCTGATGAAATCAGGATTGACCCGATGGCGGTTTACG
GTAGAGATGGACGCCGTCGCGAAAAACGGGAGGATTGAGAGGATCCCCGG
AGTAAACACCAGATTCAGCCCGGGTTGAGAGAATGGACAGACTGACGTGG
GACGGAACTGCTGAACCCGTCTCGCGAGGCCAAATTCTCAGGCGCGAATG
GGGACAGGGAAAACTATTTTCCGTGTTCAGCTGACCACGAGCAAAAGGAA
ACCAAATCCGATTGATCTTCTGCTAAATGTGCGACCATACATACATACCT
TCATTGACAATGATGTAAGGGGAGGCCCGTGAGACAATCCCCTTAAGGAA
ATACACGCTCTAAACATGGAATCATTATATAGCGCGATGGGAGGGGAGAG
AGGAGGGGGGGGGGGGGGTAGGGGGGGGGGGGGGGGGGGGTTGGGGGGGT
AGGGAGTAATCACTGCTCTGCTGTACCAGCAGATAACACGTATGTATATA
GAAGTACCAGGACTGGGGATTGCGAGTCATTGCCACTAAAATATAGTGAT
ATTTCTCTAGCGGGTTCGCAGGCATAATGAGGGTTTTATGCAGTTAAATC
GCTCCAAATTTGCGATATTCATTCACCAAAAATATTGCAACTTGATAATA
ATGTGCTGTCAGATACAAGATAGAACTTGTCCCTCATAAACGAGCAACAT
TTTCCTCGTTTTTCCTATGTTGCTGAAGAAAGATGAGGAGAAAAACGATG
TCCTGAACAGTGAGGGGTAAAATAGTAAACAAACCGGTTCTTCTAAAGTG
GGAATTAACTACATCCATCCGCGGAGCTAGCTACACACACACACATCATA
ATACTGCTATAAAGGATAACAAATAAACGCAGTTTGATGGAGTGCAAGAT
AAAACCCACCGAGTTCAAGATTATGTTAAGACATTTAAACGTTAGGCTGA
TGACTAAGACCGATACTTTGAGGGCCGACGACGTAGTACACGGGCAGCGT
TGAAAATAATTGCATGAAGGCGCGCGTGATGCGTGGTTTGTAGATGTGGC
TATTAGGGGCCCGAAATGAACTTAGTAAAAAAAAAATGTTCCTCTGCAAA
CTGGAGGGTGGTAACCCCAGTATCTAGCACATACATTCGACAGGTGACAA
CGTAAACTTACCTCCACATCCTATTGGTCGCGCTGAATATAATACGTCCG
CATCAAAGAGCATCAGTTTCCCATAGGTTGCGTGGTGGCTGAACGTTATT
CCCTCACGTCTAATATATTCCAGAGCGACATCCAAATCGCACCTCGACTG
ATAATACATAATACGTATTTTCTTTTAGGTTTGTTTGTGTAATTGTATTG
TCTAAATAATAATCATACACCGCTCTATGATTACGTGACCCCCGTTCCGC
TCAATCTCCATTTAATTTCCAGATATCCCGCCAGGTTACCAACTGCGCCA
TCGGTCGCCTAGCCAGTACTACACGGCAGGCACCCAGGGCCACCTTTCGG
GAGTTTAAGCCCCTCGAACGTGGAAGAATTCAGACAGACGTGGTTCACCT
GAGACGCCATAGATCCTAGCTTGAATGGACTCGCTCCTGGGGATGAACAG
CAGAAGAGCCCGATCGTTCCGTGAATTGTTTCCTAATACGACTCGCTCAC
CTTACTTACCTGAAAAGCTTTGTTTATTAATACGCCGCAAGGCGAGGATA
TCGGTTGCTCGACCGAAGCTTCGCTTAGATTTGCCTTGGATGCTTATACT
GTACAAACTATATCGCAGGACATAGTATGTATGTCTAGCAGGCAGCGTAC
ATATTATCAAGAACTAAGTATACTTATTATGCATGTTGTTTTAGAAGGTA
CCCGCTTGCTGATGGCACAATGAAACACATATTATTTCCGTTATCTGCAG
CAACATGATCATCAGTAATATTTGCGTGTCAGGACTGTTGGTGTGATTTT
TTGTTCCTAATACAATAACACCGGAATGCATTGAATGTTCTTATGTTTAG
AGTATCATCAGTAGTTTTCTTGACCCTGGGGAAGATACCATTAATAACAT
AGCTTCGGGGAAGTGTAGTGGTGTATGGGCTGTGCCGTCAAGTGCGATCG
GATAATAGGTGGATCTATAGTACTATTATCCTAGTCATTATTCATTGAAA
CCCTGTAGAGGCGTTTAGATGTAACGTACAACATGTATCTAGATCCGACT
TTGGGCAACGACCTGGCTACCATCCTCCCATTTAGGCAGACATCGTGTTG
TTGGTTAATGTGGTTGCCCCAGAGGTCGAGGCCAGACATTACGAACGCTT
TCTGAGACGTGGCGTACCACTTGATGATTTGTGCGTGAGGCATTGGAAAG
TCGTGCTGAGGATATTAGGATACCTCTATGAAACTCCTGAACTGACTATC
AGCTGCAAAAAGGGGAGAAAATTGTCTCAACCGGTGTAGTACGCAGATGC
CGACTATACAAACAAGTAGGGAGACTAGCCACATGTAACACTATGAGGTG
CTGGCCACCACCGAGGCCAAGTACATGGCCGTGGCTGAAGCTAAGGCTGG
GATTTTGTGTGTGCGATGATGTTCATTTAGCCGAAGTCGGATACGGGGAG
CAAATAAATATAATTATTCTGGAGAAAATGAGGGAGCAAAGGAAATGCTT
GACGATTGATGATGGCTGAATACCCCCTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig20375:387..6917+

>mRNA_H-elongata_contig20375.5796.1 ID=mRNA_H-elongata_contig20375.5796.1|Name=mRNA_H-elongata_contig20375.5796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig20375:387..6917+ (Himanthalia elongata Himel1 dioecious)
ATGGATCACGCCGCCGAGCCCGTGACTATTGTTACGGCCGCTGACCAAGC
GCTCGCCGTGAACGCCGAAGGCGAGAACCATTGTTGTGGTGTCCCGCCTA
CCGCTTCCACCCAAGTCAAAGCGATGGATCACGCCGCCGAGCCCGTGACT
ATTGTTACGGCCGCTGACCAAGCGCTCGCCGTGAACGCCGAAGGCGAGAA
CCATTGTTGTGGTGTCCCGCCTACCGCTTCCACCCAAGTCAAAGCGACGC
GGATGGCATCTGTAATGATAATTGTTATCCATGTCATCGCCCTCTTCTTT
GGCACTATTTTTTGGGACGCGGATGGCATCTGTAATGATAATTGTTATCC
ATGTCATCGCCCTCTTCTTTGGCACTATTTTTTGGGGGCAATGGGTTGCC
TCTCTTATCGCCATTGTCATGGGCTCCATCGTTTTGTGTCATTTCAACAA
GTACGCCTATAACGCGGCGGCGTTTCTCTTCCTGGTCGCTATAACCTTCG
ATGTCTTATCGTGCTACTTTTGGGCAATGGGTTGCCTCTCTTATCGCCAT
TGTCATGGGCTCCATCGTTTTGTGTCATTTCAACAAGTACGCCTATAACG
CGGCGGCGTTTCTCTTCCTGGTCGCTATAACCTTCGATGTCTTATCGTGC
TACTTTTGGATTATGTTTGCTGAAAATTCAACTGACGATGGCACCGACGA
TGACATCAGCGAGGATGAAACCGAAAGAACAACCAAGCTGTTTTTGATTT
CCCCTGCCATTGGGGCTGTGTGTCTCTTCCTTGGAGCCATCGCCGCATTT
ACGGCGACCTGCACCTGGGAAAAGAGATTATGTTTGCTGAAAATTCAACT
GACGATGGCACCGACGATGACATCAGCGAGGATGAAACCGAAAGAACAAC
CAAGCTGTTTTTGATTTCCCCTGCCATTGGGGCTGTGTGTCTCTTCCTTG
GAGCCATCGCCGCATTTACGGCGACCTGCACCTGGGAAAAGAACAGACGT
GGTTCACCTGAGACGCCATAGACAGACGTGGTTCACCTGAGACGCCATAG
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