mRNA_H-elongata_contig203541.5785.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203541.5785.1
Unique NamemRNA_H-elongata_contig203541.5785.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5KHR7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.450e-23
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   22 EAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            + E  P++    M SKYK  W  AM++E+ G   + TF     LP+G KA GS+WV S+K+ E+G I+  KAR+VA+GF +  G++   +S+  P+ AS+K ++ V +E G K   +DVKQAY   K+
Sbjct:  110 DVEAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTETFTKAKELPEGRKAIGSKWVFSWKTNEEGLIVDFKARMVARGFSQIPGIDSHHSSSACPSAASIKTVIAVVTEKGKKLARWDVKQAYIHAKL 237          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.950e-23
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   19 NEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            ++ E  P++    M SKYK  W  AM++E+ G   + TF  +  LP+G KA GS+WVLS+K+ E+G  +  KAR+VA+GF +  G++   +S   P+ AS+K ++ VA+E G K   +DVKQAY   K+
Sbjct:  138 SDVEAVPMTYKDMMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTNENGLTVDFKARMVARGFSQIPGIDFHHSSLACPSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKL 266          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: UPI0016610032 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610032)

HSP 1 Score: 92.8 bits (229), Expect = 8.330e-21
Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            AW  AM+ E+  ++ + T+++ D LP G  A   +WV   K +E G +IK KARLVA+GF+++EG++  D  AP     SV++L+ +A++ G++ +H DVK A+  G +
Sbjct:   69 AWRAAMQXEMDAVERNKTWELAD-LPAGHHAISLKWVFKLKKDETGEVIKHKARLVARGFVQQEGIDFDDAFAPVARMESVRLLLALAAQEGWRVHHIDVKSAFLNGDL 176          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: I1R6T1_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=I1R6T1_ORYGL)

HSP 1 Score: 94.0 bits (232), Expect = 8.730e-20
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   79 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            AW  AMREE+  +  + T++++D LP G +  G +WV   K  E G ++K KARLVA+GF+++ G++  +  AP     S+++L+ VA++ G++ +H DVK A+  G +
Sbjct:    9 AWRAAMREEMDAVNRNGTWELVD-LPHGHRPIGLKWVYKLKKNEAGKVVKHKARLVARGFVQQPGIDFDEVFAPVARMESIRLLLAVAAQKGWRVHHMDVKSAFLNGDL 116          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5KBK7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-19
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   19 NEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            ++ E  P++    M SKYK  W  AM++E+ G   + T   +   P+G KA GS+WV S+K+ E+  I+  KAR+V++GF +  G++   +S+  P+ AS+K +  VA+E G K  H DVKQA + GK+
Sbjct:  691 SDVEAVPITYKDVMCSKYKVFWEAAMKKEIDGHGKTGTLTKVKEPPEGRKAIGSKWVFSWKTNEEVLIVDFKARMVSRGFSQIPGIDFHHSSSACPSAASIKTVFAVATEEGKKLAHCDVKQAMS-GKV 818          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A446MQR5_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446MQR5_TRITD)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-19
Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   82 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            W KAM EEL  +K + T++++   P G +A G +WV   K + +GN+I+ KARLVAKG+++R G++  +  AP     +V++LM +A+  G++ +H DVK A+  G++
Sbjct:  940 WKKAMEEELKSIKENDTWEMVTP-PTGVRAIGLKWVFKLKKDVEGNVIRHKARLVAKGYVQRHGIDFDEVFAPVARLETVRLLMALAANEGWRVHHMDVKSAFLNGEL 1046          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A438JIJ4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JIJ4_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 1.150e-19
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   82 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKG 399
            WI+AM+ E+  ++ + T+K+ + LP+ + A G +WV   K   DG+I + KARLV KGF +  GV+  DT AP     ++++L+ +A +MG+K YH DVK A+  G
Sbjct:   11 WIEAMKAEIDAIERNGTWKLTE-LPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNG 115          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A8J5R314_ZIZPA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5R314_ZIZPA)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-19
Identity = 42/109 (38.53%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   79 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            AW  AM++E+  ++ + T+++ D LP G +A   +WV   K +E G ++K KARLVA+GF+++EGV+  D  AP     S+++L+ +A++ G++ YH DVK A+  G +
Sbjct:  150 AWRAAMQQEMDAVERNRTWELAD-LPAGHRAITLKWVFKLKKDEAGVVVKHKARLVARGFVQQEGVDFDDAFAPVARMESIRVLLALAAQEGWRVYHMDVKSAFLNGDL 257          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.570e-19
Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   94 MREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
            M++E+ G   + TF  +  LP+G KA GS+WV S+K+ E G I+  K+R++A+GF +  G++   + +  P+ AS+K ++ VA+EMG K  H+DVKQAY   K+
Sbjct:    1 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKL 104          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A438FT52_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT52_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 2.020e-19
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   82 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKG 399
            WI+AM+ E+  ++ + T+K+ + LP+ + A G +WV   K   DG+I + KARLV KGF +  GV+  DT AP     ++++L+ +A +MG+K YH DVK A+  G
Sbjct:  821 WIEAMKAEIDAIERNGTWKLTE-LPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNG 925          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHR7_9PHAE1.450e-2340.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J7P7_9PHAE1.950e-2341.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00166100328.330e-2138.53hypothetical protein n=1 Tax=Serratia marcescens T... [more]
I1R6T1_ORYGL8.730e-2037.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBK7_9PHAE1.070e-1938.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A446MQR5_TRITD1.090e-1938.89Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A438JIJ4_VITVI1.150e-1940.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5R314_ZIZPA1.390e-1938.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE1.570e-1941.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FT52_VITVI2.020e-1940.57Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203541contigH-elongata_contig203541:3..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.4
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog15368.BRADI3G49960.1
KEGG koko:K20093
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.1056862-CDS-H-elongata_contig203541:2..4071622930144.1056862-CDS-H-elongata_contig203541:2..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203541 3..407 -
1691679297.9630136-CDS-H-elongata_contig203541:2..4071691679297.9630136-CDS-H-elongata_contig203541:2..407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203541 3..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203541.5785.1prot_H-elongata_contig203541.5785.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203541 3..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203541.5785.1

>prot_H-elongata_contig203541.5785.1 ID=prot_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MPSGPLNEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDG
LPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAP
TPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI
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mRNA from alignment at H-elongata_contig203541:3..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203541.5785.1 ID=mRNA_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig203541:3..407- (Himanthalia elongata Himel1 dioecious)
ATGCCTTCTGGTCCGCTAAATGAAGCAGAGACACCCCCTGTGTCGGTTGG GGGGGGAATGAAGTCTAAATACAAGAGTGCTTGGATTAAAGCCATGAGGG AAGAGTTGAGCGGTCTTAAGAATTCGAGTACCTTTAAGGTTTTGGATGGC CTACCAAAGGGGGAGAAGGCAGCTGGTTCCCGGTGGGTGCTGTCCTACAA ATCAGAGGAAGATGGCAATATTATCAAAACAAAGGCTAGACTTGTTGCGA AGGGGTTCATCGAGAGAGAGGGCGTGAATTGCTTGGACACATCTGCTCCT ACACCTGCAGGAGCATCAGTCAAAATGCTGATGGTTGTTGCGAGCGAGAT GGGGTTCAAGACATACCACTTTGATGTAAAGCAAGCGTACACGAAGGGAA AAATT
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Coding sequence (CDS) from alignment at H-elongata_contig203541:3..407-

>mRNA_H-elongata_contig203541.5785.1 ID=mRNA_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig203541:3..407- (Himanthalia elongata Himel1 dioecious)
ATGCCTTCTGGTCCGCTAAATGAAGCAGAGACACCCCCTGTGTCGGTTGG
GGGGGGAATGAAGTCTAAATACAAGAGTGCTTGGATTAAAGCCATGAGGG
AAGAGTTGAGCGGTCTTAAGAATTCGAGTACCTTTAAGGTTTTGGATGGC
CTACCAAAGGGGGAGAAGGCAGCTGGTTCCCGGTGGGTGCTGTCCTACAA
ATCAGAGGAAGATGGCAATATTATCAAAACAAAGGCTAGACTTGTTGCGA
AGGGGTTCATCGAGAGAGAGGGCGTGAATTGCTTGGACACATCTGCTCCT
ACACCTGCAGGAGCATCAGTCAAAATGCTGATGGTTGTTGCGAGCGAGAT
GGGGTTCAAGACATACCACTTTGATGTAAAGCAAGCGTACACGAAGGGAA
AAATTATGCCTTCTGGTCCGCTAAATGAAGCAGAGACACCCCCTGTGTCG
GTTGGGGGGGGAATGAAGTCTAAATACAAGAGTGCTTGGATTAAAGCCAT
GAGGGAAGAGTTGAGCGGTCTTAAGAATTCGAGTACCTTTAAGGTTTTGG
ATGGCCTACCAAAGGGGGAGAAGGCAGCTGGTTCCCGGTGGGTGCTGTCC
TACAAATCAGAGGAAGATGGCAATATTATCAAAACAAAGGCTAGACTTGT
TGCGAAGGGGTTCATCGAGAGAGAGGGCGTGAATTGCTTGGACACATCTG
CTCCTACACCTGCAGGAGCATCAGTCAAAATGCTGATGGTTGTTGCGAGC
GAGATGGGGTTCAAGACATACCACTTTGATGTAAAGCAAGCGTACACGAA
GGGAAAAATT
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