mRNA_H-elongata_contig20321.5769.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20321.5769.1
Unique NamemRNA_H-elongata_contig20321.5769.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20321.5769.1 vs. uniprot
Match: A0A6H5JPP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP0_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.530e-59
Identity = 137/297 (46.13%), Postives = 171/297 (57.58%), Query Frame = 3 
Query:    3 ISFMFGRELAKRGFEQESWNYLTGSAAPWNRQIYQVRAAMSIPAVPSSQEDLDIAISSLEGAIERLLPEADT----SRCGTLGRGGLAERKGSCGVGNASSEARPLSACSFGGLNYPDVALDDLPLLAFADQRFRRRSYG----ERAGARDT--GGGGSREGHQSSPPSSGKGPNEVAAEAGAXXXXXXXXXXXXXXXGT-----------SPYGAIARLFSRLCPDLVGFVSPWLKAFAGGEGMAPREFQKGGQFGEAGRDGRVSVMFVSSRFCNHGTTKNIAGLMRLLPRDFFEV 830
            ISFM GREL+KRGF++ESW+YLT +AAPWNRQIY++R+A+SIP V SS++DL +A+++LEG + R  P  +     +R             G            PLS+CSFG LNYPDVA D LPLLAFAD R+ RR+ G    + AG+R +  GGGG+ +G +      G  P  V+ E                  G            S YG+I RLF RLCPDL  FV+PWL  + G   +AP     GG  GEA  DGRV V FVSSRF NH TTK +A LMRLLPR  FE+
Sbjct:  392 ISFMLGRELSKRGFQKESWHYLTSAAAPWNRQIYRIRSALSIPTVASSEQDLALAMATLEGWLRRQEPLVEDPPQPARXXXXXXXXXXXXXGDFET--------PLSSCSFGALNYPDVAFDSLPLLAFADHRYPRRNRGGLEADDAGSRRSPEGGGGTGDGDKDE----GVPPRGVSGEVDGDAWRMPGLVGRSAGKGLDENGGDDADRLSLYGSIGRLFWRLCPDLGAFVAPWLDRYGGASSLAPEA--DGGLRGEA--DGRVRVAFVSSRFGNHATTKALAALMRLLPRQHFEI 672
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BLAST of mRNA_H-elongata_contig20321.5769.1 vs. uniprot
Match: D8LAX0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX0_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 9.570e-59
Identity = 137/289 (47.40%), Postives = 163/289 (56.40%), Query Frame = 3 
Query:    3 ISFMFGRELAKRGFEQESWNYLTGSAAPWNRQIYQVRAAMSIPAVPSSQEDLDIAISSLEGAIERLLPEADTSRCGTLGRGGLAERKGSCGVGNASSEARPLSACSFGGLNYPDVALDDLPLLAFADQRFRRRSYG--ERAGA----RDTGGGGSREGHQSSPPSSGKGPNEVAAEA-------GAXXXXXXXXXXXXXXXGTSPYGAIARLFSRLCPDLVGFVSPWLKAFAGGEGMAPREFQKGGQFGEAGRDGRVSVMFVSSRFCNHGTTKNIAGLMRLLPRDFFEV 830
            ISFM GREL+KRGF++ESW+YLT +AAPWNRQIY++R+A+SIP V SS++DL +A+++LEG + R  P                             E  PLS CSFG LNYPDVA D LPLLAFAD R+ RR+ G  E   A       GGGG ++  +  PP    G  EV  +A       G                  S YG I RLF RLCPDL  FV+PWL  + G   +AP     GG  GEA  DGRV V FVSSRF NH TTK +A LMRLLPR  FEV
Sbjct:  148 ISFMLGRELSKRGFQKESWHYLTSAAAPWNRQIYRIRSALSIPTVASSEQDLALAMAALEGWLRRQEPXXXXXXXXXXXXXXXXXXXXXXXXXXXDFET-PLSTCSFGALNYPDVAFDSLPLLAFADHRYPRRNRGGFEAVDADYRRSPAGGGGDKD--EGVPPRGVSG--EVDGDAWRKPGLAGRSAWKGLDENGEDDADRMSLYGPIGRLFGRLCPDLGAFVAPWLDRYGGASSLAPEA--DGGLRGEA--DGRVRVAFVSSRFGNHATTKALAALMRLLPRQHFEV 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20321.5769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPP0_9PHAE1.530e-5946.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAX0_ECTSI9.570e-5947.40TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20321contigH-elongata_contig20321:4464..6446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size830
Cds size819
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20321.5769.1prot_H-elongata_contig20321.5769.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20321 4475..6446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.5160217-UTR-H-elongata_contig20321:4463..44741622930142.5160217-UTR-H-elongata_contig20321:4463..4474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20321 4464..4474 +
1691679297.3078902-UTR-H-elongata_contig20321:4463..44741691679297.3078902-UTR-H-elongata_contig20321:4463..4474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20321 4464..4474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.5290403-CDS-H-elongata_contig20321:4474..45611622930142.5290403-CDS-H-elongata_contig20321:4474..4561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20321 4475..4561 +
1691679297.3177526-CDS-H-elongata_contig20321:4474..45611691679297.3177526-CDS-H-elongata_contig20321:4474..4561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20321 4475..4561 +
1622930142.54233-CDS-H-elongata_contig20321:5714..64461622930142.54233-CDS-H-elongata_contig20321:5714..6446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20321 5715..6446 +
1691679297.3295658-CDS-H-elongata_contig20321:5714..64461691679297.3295658-CDS-H-elongata_contig20321:5714..6446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20321 5715..6446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20321.5769.1

>prot_H-elongata_contig20321.5769.1 ID=prot_H-elongata_contig20321.5769.1|Name=mRNA_H-elongata_contig20321.5769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=273bp
MFGRELAKRGFEQESWNYLTGSAAPWNRQIYQVRAAMSIPAVPSSQEDLD
IAISSLEGAIERLLPEADTSRCGTLGRGGLAERKGSCGVGNASSEARPLS
ACSFGGLNYPDVALDDLPLLAFADQRFRRRSYGERAGARDTGGGGSREGH
QSSPPSSGKGPNEVAAEAGAGDGSGEAPRGDGDTDGTSPYGAIARLFSRL
CPDLVGFVSPWLKAFAGGEGMAPREFQKGGQFGEAGRDGRVSVMFVSSRF
CNHGTTKNIAGLMRLLPRDFFEV
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mRNA from alignment at H-elongata_contig20321:4464..6446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20321.5769.1 ID=mRNA_H-elongata_contig20321.5769.1|Name=mRNA_H-elongata_contig20321.5769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1983bp|location=Sequence derived from alignment at H-elongata_contig20321:4464..6446+ (Himanthalia elongata Himel1 dioecious)
AGATATCTTTCATGTTCGGCAGGGAGCTTGCCAAGCGCGGGTTCGAGCAA
GAATCGTGGAACTACTTGACTGGATCGGCGGCACCCTGGAATAGACAGGC
AAGACTCCTATAATAGGGTGGTCTACAACTCGCTTCTGGTATCTCGAGTG
TGTATTTTTATTATGGAACTCCCAGGGACAGGACACATCCCTCAAATTTT
AATTTATTTTGACGGCTAGTGATTGGCAGACTGACGTACGTACCAAAATC
TTGGGTTTTCAAATAAAATTCCAACCGTAAGATTTTCGGGGCGTGAGCAT
GAAATTTCTCCCCCGCTTTCTTCTCGGAATCTTCACGACAAAGACTGCAA
CAGGACTGTCAGCACCCAGATGGGTAATTATATACACAAAATTTTCAGAC
TACCGTTTTGTTTGTGTTTCTACCCACCTAGATTTTTCGAGAAGGAGAAA
AAACATGAAAATGGCAGGAGAGGGGAGAGGAAATTTATATCCCCGGGAGG
TTCTGACTTCTTATTCTTGGCCTTATCTAGCAAGATCGTGTTTATTATGC
ACAGATACGCAGATCGCGTTGCACAGGGTCACAACAATTCATTTGAAATG
TGCAGTCATGATTCTGTGAGAGTGCCCTCTCGAGTACCTCCGCCACCGAA
AACCGGATTTTTCATGTTTGGGGCGTGAGGTTTGTGTCACGGTTCTCGAT
TTCTCAGGGCTACTCTGCGCCTGCATGCCTGTGCGCGTCGGGGTTTTTTA
CGAATCGAAGAATCCCTCACACCTCATTATCCCCCTATCCCCGACATTCA
CGTTTGCGCACTTCACACTTAAGCGTATACACTTTCCGTGCATCAAAGGA
TTCAACTTCTCGCGGAAGACATAATCCGTCCCCCACCCAACATCCTCTTC
CCCTGTTTTTGCTTTATTATTATTATTATTATTTATTTTTTTCAGTAACT
AGAGTAAGATCTTAACTCTTTTTCCTCGGGCGGTGACATTAAAAAAGCTC
CGGTCTTAAAAGCTTCAGTGCCATTTCTTCGCCCATTTTGTAAAATTGGA
TAGAGGGGTAAACTAAGAGTGTGAGGTCGGAATGGGGATGGGTTAAGGTG
GAAAATAGATAATTCACGTTTTGATTTTGCGTTGCACCTCTTTCCTTCCG
CAGAAGCATGCTCTCACACTTACCGAACAAATATGATATACTATACTATA
TTATATTATACTGTACCTTTGGTGGTTCAAAAACATCTCGCATCTCGCCA
GATCTACCAAGTGCGGGCAGCGATGTCCATCCCGGCAGTGCCGTCGAGCC
AAGAAGACCTGGACATTGCGATATCGTCACTCGAGGGCGCCATCGAACGC
CTTCTCCCAGAGGCCGACACCTCCCGTTGCGGAACGTTGGGAAGGGGTGG
GCTTGCCGAAAGGAAAGGAAGTTGTGGCGTCGGTAATGCATCGAGCGAGG
CGAGACCCCTGTCGGCGTGCTCCTTCGGGGGGCTAAACTACCCAGACGTC
GCCCTCGACGACCTCCCGCTGCTGGCGTTCGCCGACCAACGATTCCGGCG
ACGGAGCTACGGGGAGCGCGCAGGAGCTCGAGACACTGGCGGCGGCGGCA
GCCGCGAGGGCCACCAGAGTTCTCCGCCCAGCAGTGGGAAAGGACCGAAT
GAGGTAGCGGCGGAAGCGGGGGCGGGGGACGGGAGCGGGGAGGCGCCGAG
GGGAGACGGAGACACCGACGGGACGTCCCCTTACGGAGCCATCGCGAGGT
TGTTCTCGAGGCTCTGCCCCGACCTCGTGGGTTTCGTTTCGCCGTGGCTG
AAGGCGTTCGCGGGAGGGGAAGGGATGGCGCCGAGGGAGTTCCAGAAGGG
GGGGCAGTTCGGGGAGGCGGGTAGAGACGGGCGAGTAAGCGTGATGTTCG
TGTCGTCGCGGTTCTGTAATCACGGGACGACCAAAAACATCGCGGGGCTA
ATGCGGCTGCTCCCCAGGGATTTTTTTGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig20321:4464..6446+

>mRNA_H-elongata_contig20321.5769.1 ID=mRNA_H-elongata_contig20321.5769.1|Name=mRNA_H-elongata_contig20321.5769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1638bp|location=Sequence derived from alignment at H-elongata_contig20321:4464..6446+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCAGGGAGCTTGCCAAGCGCGGGTTCGAGCAAGAATCGTGGAA
CTACTTGACTGGATCGGCGGCACCCTGGAATAGACAGATGTTCGGCAGGG
AGCTTGCCAAGCGCGGGTTCGAGCAAGAATCGTGGAACTACTTGACTGGA
TCGGCGGCACCCTGGAATAGACAGATCTACCAAGTGCGGGCAGCGATGTC
CATCCCGGCAGTGCCGTCGAGCCAAGAAGACCTGGACATTGCGATATCGT
CACTCGAGGGCGCCATCGAACGCCTTCTCCCAGAGGCCGACACCTCCCGT
TGCGGAACGTTGGGAAGGGGTGGGCTTGCCGAAAGGAAAGGAAGTTGTGG
CGTCGGTAATGCATCGAGCGAGGCGAGACCCCTGTCGGCGTGCTCCTTCG
GGGGGCTAAACTACCCAGACGTCGCCCTCGACGACCTCCCGCTGCTGGCG
TTCGCCGACCAACGATTCCGGCGACGGAGCTACGGGGAGCGCGCAGGAGC
TCGAGACACTGGCGGCGGCGGCAGCCGCGAGGGCCACCAGAGTTCTCCGC
CCAGCAGTGGGAAAGGACCGAATGAGGTAGCGGCGGAAGCGGGGGCGGGG
GACGGGAGCGGGGAGGCGCCGAGGGGAGACGGAGACACCGACGGGACGTC
CCCTTACGGAGCCATCGCGAGGTTGTTCTCGAGGCTCTGCCCCGACCTCG
TGGGTTTCGTTTCGCCGTGGCTGAAGGCGTTCGCGGGAGGGGAAGGGATG
GCGCCGAGGGAGTTCCAGAAGGGGGGGCAGTTCGGGGAGGCGGGTAGAGA
CGGGCGAGTAAGCGTGATGTTCGTGTCGTCGCGGTTCTGTAATCACGGGA
CGACCAAAAACATCGCGGGGCTAATGCGGCTGCTCCCCAGGGATTTTTTT
GAGGTAATCTACCAAGTGCGGGCAGCGATGTCCATCCCGGCAGTGCCGTC
GAGCCAAGAAGACCTGGACATTGCGATATCGTCACTCGAGGGCGCCATCG
AACGCCTTCTCCCAGAGGCCGACACCTCCCGTTGCGGAACGTTGGGAAGG
GGTGGGCTTGCCGAAAGGAAAGGAAGTTGTGGCGTCGGTAATGCATCGAG
CGAGGCGAGACCCCTGTCGGCGTGCTCCTTCGGGGGGCTAAACTACCCAG
ACGTCGCCCTCGACGACCTCCCGCTGCTGGCGTTCGCCGACCAACGATTC
CGGCGACGGAGCTACGGGGAGCGCGCAGGAGCTCGAGACACTGGCGGCGG
CGGCAGCCGCGAGGGCCACCAGAGTTCTCCGCCCAGCAGTGGGAAAGGAC
CGAATGAGGTAGCGGCGGAAGCGGGGGCGGGGGACGGGAGCGGGGAGGCG
CCGAGGGGAGACGGAGACACCGACGGGACGTCCCCTTACGGAGCCATCGC
GAGGTTGTTCTCGAGGCTCTGCCCCGACCTCGTGGGTTTCGTTTCGCCGT
GGCTGAAGGCGTTCGCGGGAGGGGAAGGGATGGCGCCGAGGGAGTTCCAG
AAGGGGGGGCAGTTCGGGGAGGCGGGTAGAGACGGGCGAGTAAGCGTGAT
GTTCGTGTCGTCGCGGTTCTGTAATCACGGGACGACCAAAAACATCGCGG
GGCTAATGCGGCTGCTCCCCAGGGATTTTTTTGAGGTA
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