mRNA_H-elongata_contig202937.5757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202937.5757.1
Unique NamemRNA_H-elongata_contig202937.5757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: D7G461_ECTSI (JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G461_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.230e-52
Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVMDEEG--SRRRSAH 351
            +NYFVD+LPRIRRK+G S+KIYEFVQYPGDTVFVPGGW HAVLNL+D+VAITQNFCS  +  + VWRKTRTGRKKM+VKWL+EL++E+P LA TAR LN+EDGFVM ++G  SRRRS H
Sbjct:  262 INYFVDLLPRIRRKHGNSIKIYEFVQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEK-VWRKTRTGRKKMSVKWLKELDKEHPSLADTARRLNSEDGFVMVDKGASSRRRSGH 379          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: K3X3W1_GLOUD (JmjC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3W1_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 6.850e-40
Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYG-ESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVM 318
            VNYF+DILPRI+R +  E L+  E +QYPGDT+FVPGGW HAV N++DTVA+TQNFCS Q+  R VWRKTR+GRK+MAVKWL +LE+++PHLA  A+ LNA+D +VM
Sbjct:  226 VNYFMDILPRIKRAHPPEMLRCIELMQYPGDTIFVPGGWWHAVFNVEDTVAVTQNFCSSQNFER-VWRKTRSGRKRMAVKWLTKLEKKHPHLAALAKELNAQDNYVM 331          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: A0A7S3GT28_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT28_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.060e-37
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVM 318
            +NYFVD+LPRIR K+G +LKIYE +Q PG+T+FVPGGW H VLNL+DT+A+TQNFCS  + P  VWR TR GR KM+V+WL+EL ++YP LA  A  LN +D F M
Sbjct:  251 INYFVDMLPRIREKHGHNLKIYELIQEPGETIFVPGGWWHGVLNLEDTIAVTQNFCSCTNFP-SVWRSTRKGRPKMSVRWLKELAKQYPDLAAQALLLNDQDQFAM 355          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: A0A484E8M1_BRELC (JmjC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8M1_BRELC)

HSP 1 Score: 141 bits (356), Expect = 1.180e-37
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 VNYFVDILPRIRR-KYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVM 318
            VNYF+D+LPRI++    +SL+  EF+QYPG+TVF+PGGW HAVLN++DTVA+TQNFCS Q+ P  VWRKTR GRK+MAVKWLR+LE +YP LA  A  LN +D +VM
Sbjct:  282 VNYFMDLLPRIKQANSSKSLQCIEFMQYPGETVFIPGGWWHAVLNVEDTVAVTQNFCSSQNFP-AVWRKTRKGRKRMAVKWLRKLELQYPELAVVATKLNQKDKYVM 387          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: A0A8K1CVA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVA6_PYTOL)

HSP 1 Score: 141 bits (356), Expect = 1.220e-37
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYG-ESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVM 318
            VNYF+DILPRI++ +  E L+  E +QYPGDT+FVPGGW HAV N++DTVA+TQN+CS Q+  R VWRKTRTGRK+MAVKW ++L++ +P LA  A  LN EDGFVM
Sbjct:  269 VNYFMDILPRIKKAHSPEELQCIELMQYPGDTIFVPGGWWHAVFNVEDTVAVTQNYCSSQNFER-VWRKTRTGRKRMAVKWFQKLQKHHPQLATLAVKLNREDGFVM 374          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: V9EZE5_PHYPR (JmjC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9EZE5_PHYPR)

HSP 1 Score: 140 bits (353), Expect = 3.570e-37
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYG-ESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVM 318
            VNYF+D+LPRI+R    E+L+  EF+QYPG+TVF+PGGW HAV N+DDTVA+TQNFCS Q+ P  VWRKTR+GRK+MAVKWL++LE   P LA  A  LN +D FVM
Sbjct:  291 VNYFMDLLPRIKRANAPETLQCIEFMQYPGETVFIPGGWWHAVFNVDDTVAVTQNFCSSQNFP-AVWRKTRSGRKRMAVKWLKKLETHNPELAALATELNQKDKFVM 396          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: A0A7S2D476_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D476_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.170e-36
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAED 306
            +NYFVD++PR+RR + E LKI +F+QYPG+T+FVPGGW HAV+NLDDT+ ITQNFCS  + P  VWRKTRTGRKKMAVKWL++L   YP L+  A  +N  D
Sbjct:   82 INYFVDMIPRMRRAHPE-LKIDQFIQYPGETIFVPGGWWHAVINLDDTIGITQNFCSKTNFP-VVWRKTRTGRKKMAVKWLQKLRENYPELSNLALAINQAD 181          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: A0A662YDJ8_9STRA (JmjC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDJ8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.300e-36
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 VNYFVDILPRIRR-KYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVM 318
            VNYF+D+LPR++R    E+L   EF+QYPG+TVF+PGGW HAVLN+DDTVA+TQNFCS Q+    VWRKTR+GRK+MAVKWL++LE ++P LA  A  LN +D +VM
Sbjct:  281 VNYFMDLLPRLKRASSAETLGCIEFMQYPGETVFIPGGWWHAVLNVDDTVAVTQNFCSSQNFA-TVWRKTRSGRKRMAVKWLKKLEEQHPELAAMATELNQKDKYVM 386          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: M4BIS7_HYAAE (JmjC domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIS7_HYAAE)

HSP 1 Score: 138 bits (348), Expect = 1.910e-36
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYG-ESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVMDEEGSRR 339
            VNYF+D+LPR+++    E+L+  EF+Q+PG+TVF+PGGW HAVLN+DDTVA+TQNFCS Q+ P  VWRKTR+ RK+MAVKWL+ LE   P LA  A  LN +D FVM  +G RR
Sbjct:  287 VNYFMDLLPRLKQASSPETLQCVEFMQFPGETVFIPGGWWHAVLNVDDTVAVTQNFCSSQNFP-TVWRKTRSSRKRMAVKWLKRLETHNPELAAMAMKLNQDDKFVMYSKGRRR 399          
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Match: A0A7S1TSI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSI9_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.090e-36
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 VNYFVDILPRIRRKYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVAITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNAEDGFVMDE 324
            +NYFVD+LPR+RR+Y   ++I +F+Q  G+TVFVP GW HAVLNLDDT+A+TQNFCS  + P   WRK R  RKKMA KWL +L+   P LAR  R +NAEDGF M+E
Sbjct:   95 INYFVDLLPRMRRRYAGRIRIIDFIQQEGETVFVPEGWWHAVLNLDDTMAVTQNFCSSVNLP-VAWRKCRVERKKMARKWLYKLDETRPDLARVVRDVNAEDGFPMEE 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202937.5757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G461_ECTSI6.230e-5274.79JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
K3X3W1_GLOUD6.850e-4065.42JmjC domain-containing protein n=1 Tax=Globisporan... [more]
A0A7S3GT28_9STRA1.060e-3762.26Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A484E8M1_BRELC1.180e-3764.49JmjC domain-containing protein n=1 Tax=Bremia lact... [more]
A0A8K1CVA6_PYTOL1.220e-3763.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
V9EZE5_PHYPR3.570e-3764.49JmjC domain-containing protein n=8 Tax=Phytophthor... [more]
A0A7S2D476_9STRA1.170e-3663.73Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A662YDJ8_9STRA1.300e-3662.62JmjC domain-containing protein n=2 Tax=Nothophytop... [more]
M4BIS7_HYAAE1.910e-3660.53JmjC domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A7S1TSI9_9STRA2.090e-3660.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202937contigH-elongata_contig202937:221..961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue3.7e-43
Seed eggNOG ortholog2880.D7G461
KEGG koko:K11323
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-02_001410.1
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202937.5757.1prot_H-elongata_contig202937.5757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202937 221..961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930141.0131342-CDS-H-elongata_contig202937:220..3921622930141.0131342-CDS-H-elongata_contig202937:220..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202937 221..392 +
1691679296.6787121-CDS-H-elongata_contig202937:220..3921691679296.6787121-CDS-H-elongata_contig202937:220..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202937 221..392 +
1622930141.0358164-CDS-H-elongata_contig202937:497..5171622930141.0358164-CDS-H-elongata_contig202937:497..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202937 498..517 +
1691679296.6908956-CDS-H-elongata_contig202937:497..5171691679296.6908956-CDS-H-elongata_contig202937:497..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202937 498..517 +
1622930141.0541642-CDS-H-elongata_contig202937:745..9611622930141.0541642-CDS-H-elongata_contig202937:745..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202937 746..961 +
1691679296.7037475-CDS-H-elongata_contig202937:745..9611691679296.7037475-CDS-H-elongata_contig202937:745..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202937 746..961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202937.5757.1

>prot_H-elongata_contig202937.5757.1 ID=prot_H-elongata_contig202937.5757.1|Name=mRNA_H-elongata_contig202937.5757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
VNYFVDILPRIRRKYGESLKIYEFVQYPGDTVFVPGGWHHAVLNLDDTVA
ITQNFCSLQSSPRPVWRKTRTGRKKMAVKWLRELEREYPHLARTARWLNA
EDGFVMDEEGSRRRSAHDRDGDDGRDNKEKSKKKKE
back to top

mRNA from alignment at H-elongata_contig202937:221..961+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202937.5757.1 ID=mRNA_H-elongata_contig202937.5757.1|Name=mRNA_H-elongata_contig202937.5757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at H-elongata_contig202937:221..961+ (Himanthalia elongata Himel1 dioecious)
GTCAACTACTTCGTGGATATTTTGCCGCGAATACGGCGAAAGTACGGGGA GTCGCTCAAGATCTACGAGTTCGTGCAATACCCCGGCGACACGGTGTTCG TGCCTGGTGGATGGCATCACGCTGTCCTCAACCTGGATGACACCGTGGCC ATCACCCAGAATTTCTGCAGTCGTCACAACTTCGACAAGGCAAGATCGGA GGAGTGCTTCGATTTATATCTAGAAATCTCTCGGGGGTGTATATCGCTGG TCGTGAGTCAAATCGAGTCCAGTCCAGTCCAGTCCAGTCCACGACCGGTG GAAGGCATCGTGTTGTTGATAAAGAGGGGGTTACCGCGGATCAAGATACA TTTTCGATGGGTCATGAAATTAGTGTTGTTGTTGTTGTTGTTAATATCCT GACGCAGGAAGGAGAAGGGTGGTGTTTGATGCCACGCGCGCCCGCCGGTC CGCCCGAACGCCTTTTTTTTTTAGTCCCCCTTGTCCGGAATGTGTGATGA TAATATTAATATTCTACTCTGGCAGGTTTGGCGAAAAACCCGAACCGGGC GGAAGAAGATGGCCGTCAAGTGGCTCCGGGAGCTCGAGAGAGAATACCCA CACCTCGCGCGGACGGCTCGGTGGCTCAACGCCGAGGACGGCTTCGTGAT GGATGAAGAAGGCAGCAGGCGGAGGTCTGCCCACGATCGAGACGGCGACG ACGGCAGGGATAATAAAGAGAAGAGTAAGAAAAAGAAGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig202937:221..961+

>mRNA_H-elongata_contig202937.5757.1 ID=mRNA_H-elongata_contig202937.5757.1|Name=mRNA_H-elongata_contig202937.5757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig202937:221..961+ (Himanthalia elongata Himel1 dioecious)
GTCAACTACTTCGTGGATATTTTGCCGCGAATACGGCGAAAGTACGGGGA
GTCGCTCAAGATCTACGAGTTCGTGCAATACCCCGGCGACACGGTGTTCG
TGCCTGGTGGATGGCATCACGCTGTCCTCAACCTGGATGACACCGTGGCC
ATCACCCAGAATTTCTGCAGTCGTCAACTACTTCGTGGATATTTTGCCGC
GAATACGGCGAAAGTACGGGGAGTCGCTCAAGATCTACGAGTTCGTGCAA
TACCCCGGCGACACGGTGTTCGTGCCTGGTGGATGGCATCACGCTGTCCT
CAACCTGGATGACACCGTGGCCATCACCCAGAATTTCTGCAGTCTCCAGT
CCAGTCCACGACCGTCCAGTCCAGTCCACGACCGGTTTGGCGAAAAACCC
GAACCGGGCGGAAGAAGATGGCCGTCAAGTGGCTCCGGGAGCTCGAGAGA
GAATACCCACACCTCGCGCGGACGGCTCGGTGGCTCAACGCCGAGGACGG
CTTCGTGATGGATGAAGAAGGCAGCAGGCGGAGGTCTGCCCACGATCGAG
ACGGCGACGACGGCAGGGATAATAAAGAGAAGAGTAAGAAAAAGAAGGAG
GTTTGGCGAAAAACCCGAACCGGGCGGAAGAAGATGGCCGTCAAGTGGCT
CCGGGAGCTCGAGAGAGAATACCCACACCTCGCGCGGACGGCTCGGTGGC
TCAACGCCGAGGACGGCTTCGTGATGGATGAAGAAGGCAGCAGGCGGAGG
TCTGCCCACGATCGAGACGGCGACGACGGCAGGGATAATAAAGAGAAGAG
TAAGAAAAAGAAGGAG
back to top