mRNA_H-elongata_contig202262.5725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202262.5725.1
Unique NamemRNA_H-elongata_contig202262.5725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig202262.5725.1 vs. uniprot
Match: D7FHX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 9.800e-19
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 REPCTPLNLQQFLSCVRATGDASLCHDFRDEVERCGMKMSQRMLKAALSDDWF 159
            R+ C P    Q L+C+R T DAS+CH+FRDEVERCG+KMSQR+L+AALSDDWF
Sbjct:   93 RQLC-PKEQSQLLACIRTTRDASMCHEFRDEVERCGVKMSQRLLRAALSDDWF 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202262.5725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX6_ECTSI9.800e-1967.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202262contigH-elongata_contig202262:80..241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006260.1
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.7910812-CDS-H-elongata_contig202262:79..2411622930137.7910812-CDS-H-elongata_contig202262:79..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202262 80..241 +
1691679295.428501-CDS-H-elongata_contig202262:79..2411691679295.428501-CDS-H-elongata_contig202262:79..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202262 80..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202262.5725.1prot_H-elongata_contig202262.5725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202262 80..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202262.5725.1

>prot_H-elongata_contig202262.5725.1 ID=prot_H-elongata_contig202262.5725.1|Name=mRNA_H-elongata_contig202262.5725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
REPCTPLNLQQFLSCVRATGDASLCHDFRDEVERCGMKMSQRMLKAALSD
DWF*
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mRNA from alignment at H-elongata_contig202262:80..241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202262.5725.1 ID=mRNA_H-elongata_contig202262.5725.1|Name=mRNA_H-elongata_contig202262.5725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig202262:80..241+ (Himanthalia elongata Himel1 dioecious)
CGCGAACCCTGTACACCCCTCAATTTACAACAGTTTTTGTCCTGCGTCCG
AGCAACGGGCGACGCGAGCCTGTGCCACGACTTCCGGGACGAGGTAGAGC
GCTGCGGCATGAAAATGTCCCAGCGCATGCTAAAAGCGGCGCTGTCTGAT
GACTGGTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig202262:80..241+

>mRNA_H-elongata_contig202262.5725.1 ID=mRNA_H-elongata_contig202262.5725.1|Name=mRNA_H-elongata_contig202262.5725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig202262:80..241+ (Himanthalia elongata Himel1 dioecious)
CGCGAACCCTGTACACCCCTCAATTTACAACAGTTTTTGTCCTGCGTCCG
AGCAACGGGCGACGCGAGCCTGTGCCACGACTTCCGGGACGAGGTAGAGC
GCTGCGGCATGAAAATGTCCCAGCGCATGCTAAAAGCGGCGCTGTCTGAT
GACTGGTTCTGACGCGAACCCTGTACACCCCTCAATTTACAACAGTTTTT
GTCCTGCGTCCGAGCAACGGGCGACGCGAGCCTGTGCCACGACTTCCGGG
ACGAGGTAGAGCGCTGCGGCATGAAAATGTCCCAGCGCATGCTAAAAGCG
GCGCTGTCTGATGACTGGTTCTGA
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