mRNA_H-elongata_contig202185.5723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig202185.5723.1
Unique NamemRNA_H-elongata_contig202185.5723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: D7G700_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G700_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.020e-38
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            P  ++SPS W S  RLL  +  FTLPCDKLDAL+AVAH IPALHR+EH  D A SLGADDFLPIFI+VLVNS VE   AQS+++ETLCDPK+MMGEAG
Sbjct: 1030 PTSNISPSGWSSSMRLLQTVGLFTLPCDKLDALMAVAHDIPALHRVEHPGDNASSLGADDFLPIFIYVLVNSRVENLAAQSVILETLCDPKKMMGEAG 1127          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S2G0S3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G0S3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.650e-24
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            P+  +SPSSW SV ++L  M+S TLP DKL+AL+AV+  IP L+ LEH +     LGAD FLPIFI+VLVNS +   V  S+V+  LCDP +++ EAG
Sbjct:  307 PVDHISPSSWGSVVKMLSTMNSHTLPYDKLEALLAVSKEIPQLYSLEHADAKPAHLGADAFLPIFIYVLVNSKMSDVVYLSIVLRNLCDPDKLLSEAG 404          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S2BJV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJV4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.630e-24
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            P+  +SPSSW S T  L  + SFTLPCDKLDAL+A A  IP L+  EH     + LGADDFLPIFI+VL+NS +      S+++  LCDP + + E G
Sbjct:    4 PVHQISPSSWESATYHLSNIDSFTLPCDKLDALLAAAKEIPNLYLQEHPGT-TEHLGADDFLPIFIYVLMNSKINELSYLSILLCNLCDPDKRLSETG 100          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S3NP42_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP42_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.640e-22
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADS-LGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            P++ +SPSSW S    L  + ++TLPCDKLDAL+A A  IPAL+R+EH   G D+ LGADDFLPIFI+VLVN+ V   +    V+ TLCDP + + E G
Sbjct:  677 PIQHISPSSWESAIYQLANIGAYTLPCDKLDALLAAAKEIPALYRVEH--PGTDTHLGADDFLPIFIYVLVNAKVPDLLHLQHVLCTLCDPDKRLSETG 773          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: F0XY90_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY90_AURAN)

HSP 1 Score: 97.4 bits (241), Expect = 1.790e-21
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            P+  +SPSSW S    L  + S+TLPCDKLDAL+A A  IP L+R+EH     + LGADDFLPIFI+VLVN+ +        V+ TLCDP + + E G
Sbjct:  587 PVHHISPSSWESAIYQLSNIGSYTLPCDKLDALLAAAKEIPQLYRIEHPGT-ENHLGADDFLPIFIYVLVNADIPNLSYLQKVLCTLCDPDKRLSETG 683          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S0TBT3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TBT3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.010e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    4 LKSLSPSSWYSVTRLL-HAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            ++  SPS W SV R+L   +   TLPC KL A+V  A  I  LH  EH  +G + LGAD+FLPIFIF +V + +ER  A S++++TLCD    +GE G
Sbjct:  459 IEKTSPSHWQSVARILKQGVGMSTLPCVKLRAIVDAAREISRLHEREH--NGQELLGADEFLPIFIFCVVRAEMERPCALSILLQTLCDRINRIGEIG 554          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S3ZMF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMF8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.050e-17
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   16 SPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            SPS W +    L  + S+TLPCD+LD L+A A  IP +   EH+  G + LG DDFLPIF++V+V +G+        ++  LCDP + + E G
Sbjct:  498 SPSKWEAAVYRLATVGSYTLPCDRLDVLLAAAREIPVIFAAEHK--GEEVLGGDDFLPIFVYVVVQAGIPDLRYLQTLLSALCDPDKRLSETG 588          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A4D9DGA1_9STRA (VPS9 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGA1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.120e-15
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    4 LKSLSPSSWYSVTRLLHAMSS--FTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            ++++S SSW +    L  +S    TLP DKLDALVA    I A HR EH +     LGAD+FLP+FI+V+   G+ R VA   ++  L DP RMM EAG
Sbjct:  811 VENISISSWEAAVGHLRRLSGEITTLPSDKLDALVAAVREIHACHRREHGDATDLHLGADEFLPVFIYVVSQCGISRLVALKNMLAALGDPARMMSEAG 909          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S4RM26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RM26_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.350e-15
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   16 SPSSWYSVTRLLH-AMSSFTLPCDKLDALVAVAHAIPALHRLEHRND--------------------GADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            SPS W SV+++LH  +   TLPC KL A+V  +  +  L+  EH                        +D+L ADDFLPIFIF +V S +ER  A  +++ TLCDP + +GE G
Sbjct: 1091 SPSEWRSVSKILHEGVGRSTLPCAKLRAIVDASKEVARLYTEEHNQSISYNVFAGLSPSNLAPNIETQSDALSADDFLPIFIFCVVKSQIERPCALCVLLRTLCDPSKRIGETG 1204          
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A485LNM0_9STRA (Aste57867_21896 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNM0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.390e-14
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   16 SPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
            SP+ W    R L  + +  LP DKL  L+  A+AI AL++LEH +D    L  DDFLPIFI+V+V++ ++  +    V+  L DP++ MGE+G
Sbjct:  619 SPTQWGDAVRALREIDAMNLPVDKLRKLLDAANAIHALYQLEHGDDKV--LSGDDFLPIFIYVIVHAQLQNPLVLLRVLNVLSDPEKRMGESG 709          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G700_ECTSI6.020e-3870.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2G0S3_9STRA3.650e-2453.06Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2BJV4_9STRA6.630e-2451.02Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3NP42_9STRA3.640e-2253.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0XY90_AURAN1.790e-2151.02Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0TBT3_9STRA9.010e-1746.94Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3ZMF8_9STRA9.050e-1741.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9DGA1_9STRA1.120e-1546.46VPS9 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S4RM26_9STRA7.350e-1538.60Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A485LNM0_9STRA3.390e-1441.94Aste57867_21896 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig202185contigH-elongata_contig202185:1..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3.3e-33
Seed eggNOG ortholog2880.D7G700
EggNOG free text desc.Vacuolar sorting protein 9 (VPS9) domain
EggNOG OGs28RHE@1,2QY6H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930137.6809285-CDS-H-elongata_contig202185:0..871622930137.6809285-CDS-H-elongata_contig202185:0..87Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202185 1..87 +
1691679295.3852654-CDS-H-elongata_contig202185:0..871691679295.3852654-CDS-H-elongata_contig202185:0..87Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202185 1..87 +
1622930137.69957-CDS-H-elongata_contig202185:811..10241622930137.69957-CDS-H-elongata_contig202185:811..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202185 812..1024 +
1691679295.3993397-CDS-H-elongata_contig202185:811..10241691679295.3993397-CDS-H-elongata_contig202185:811..1024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig202185 812..1024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig202185.5723.1prot_H-elongata_contig202185.5723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig202185 1..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig202185.5723.1

>prot_H-elongata_contig202185.5723.1 ID=prot_H-elongata_contig202185.5723.1|Name=mRNA_H-elongata_contig202185.5723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRN
DGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAGR*
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mRNA from alignment at H-elongata_contig202185:1..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig202185.5723.1 ID=mRNA_H-elongata_contig202185.5723.1|Name=mRNA_H-elongata_contig202185.5723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1024bp|location=Sequence derived from alignment at H-elongata_contig202185:1..1024+ (Himanthalia elongata Himel1 dioecious)
CCGCTCAAGAGCTTGTCTCCAAGCAGCTGGTACAGCGTGACGAGGTTGCT GCACGCCATGAGCTCATTTACGCTTCCTTGCGATAAGGTGTACATTGCCT AGCGCTTTCCTCTGTTATGTATGTGTTGTTATCTCGTGTGTTTCTTCTAG AGTCACCTGCGGCAGGTGGGTGGATGGATGGGATCATACCCCGTCGCCAA CCTAGAAATCACGTCGCATTAAATATAGACATAAACGAGATGCTACGCTG CCAGAACCGCCAGGGGGATGGAAACCTTGTTCCACGGAAAAAACCCGACT CTTTTCGAGGGTCGATTGACGTTAGAAACACGCCAAAAATAAGCCAAACA TCGGTATAGCGCCGAAGGTCCTCTGCGGTGTTTGGAGTATCTTTGTGTTC GCTGAATATGCAACGTTGAGTTACCCGATGTGTCTAGTTATAGGTATGAC CGATGGCAGCATGTCCGGTTTGGCGTAGCAAACATGAGGATGATGACTAA AAGTTGGTATAATTCATCCTCGTGAAACGTAGCCTGGCCGGCCAGCGAAA ACCCGGCATTATATCCCTCCGTCCCGGCGTTGTTGGGATGTGAGGTATAT ATACTATGTATGTCTGTTAGGGCACGACATGCGTTTAACATAAGCACACA CACACACACACCACACCCCTCCCCTAACCTCAAGCTTAGGAAAAAATAAT CCGGGGATGAAACGAGATTTGTAAAGCTGGAGTACTAGTTCTTTTGACGA AGAAAACGTTTGCACATCTTGTTGGCCCGCTGCTTGCGTCGTGAACTCGC CCTCTGTTAAGCTCGATGCGCTGGTGGCCGTTGCGCACGCCATACCGGCG CTGCACCGGTTGGAACATCGGAACGACGGCGCAGACAGCCTCGGCGCCGA CGACTTCTTGCCGATCTTCATCTTCGTGCTGGTGAACTCCGGGGTCGAGA GGGCGGTCGCTCAGTCCCTCGTGGTAGAGACGCTCTGTGATCCCAAGAGG ATGATGGGCGAGGCAGGTCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig202185:1..1024+

>mRNA_H-elongata_contig202185.5723.1 ID=mRNA_H-elongata_contig202185.5723.1|Name=mRNA_H-elongata_contig202185.5723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig202185:1..1024+ (Himanthalia elongata Himel1 dioecious)
CCGCTCAAGAGCTTGTCTCCAAGCAGCTGGTACAGCGTGACGAGGTTGCT
GCACGCCATGAGCTCATTTACGCTTCCTTGCGATAAGCCGCTCAAGAGCT
TGTCTCCAAGCAGCTGGTACAGCGTGACGAGGTTGCTGCACGCCATGAGC
TCATTTACGCTTCCTTGCGATAAGCTCGATGCGCTGGTGGCCGTTGCGCA
CGCCATACCGGCGCTGCACCGGTTGGAACATCGGAACGACGGCGCAGACA
GCCTCGGCGCCGACGACTTCTTGCCGATCTTCATCTTCGTGCTGGTGAAC
TCCGGGGTCGAGAGGGCGGTCGCTCAGTCCCTCGTGGTAGAGACGCTCTG
TGATCCCAAGAGGATGATGGGCGAGGCAGGTCGGTGACTCGATGCGCTGG
TGGCCGTTGCGCACGCCATACCGGCGCTGCACCGGTTGGAACATCGGAAC
GACGGCGCAGACAGCCTCGGCGCCGACGACTTCTTGCCGATCTTCATCTT
CGTGCTGGTGAACTCCGGGGTCGAGAGGGCGGTCGCTCAGTCCCTCGTGG
TAGAGACGCTCTGTGATCCCAAGAGGATGATGGGCGAGGCAGGTCGGTGA
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