mRNA_H-elongata_contig202185.5723.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: D7G700_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G700_ECTSI) HSP 1 Score: 144 bits (363), Expect = 6.020e-38 Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
P ++SPS W S RLL + FTLPCDKLDAL+AVAH IPALHR+EH D A SLGADDFLPIFI+VLVNS VE AQS+++ETLCDPK+MMGEAG
Sbjct: 1030 PTSNISPSGWSSSMRLLQTVGLFTLPCDKLDALMAVAHDIPALHRVEHPGDNASSLGADDFLPIFIYVLVNSRVENLAAQSVILETLCDPKKMMGEAG 1127
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S2G0S3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G0S3_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.650e-24 Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
P+ +SPSSW SV ++L M+S TLP DKL+AL+AV+ IP L+ LEH + LGAD FLPIFI+VLVNS + V S+V+ LCDP +++ EAG
Sbjct: 307 PVDHISPSSWGSVVKMLSTMNSHTLPYDKLEALLAVSKEIPQLYSLEHADAKPAHLGADAFLPIFIYVLVNSKMSDVVYLSIVLRNLCDPDKLLSEAG 404
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S2BJV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJV4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 6.630e-24 Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
P+ +SPSSW S T L + SFTLPCDKLDAL+A A IP L+ EH + LGADDFLPIFI+VL+NS + S+++ LCDP + + E G
Sbjct: 4 PVHQISPSSWESATYHLSNIDSFTLPCDKLDALLAAAKEIPNLYLQEHPGT-TEHLGADDFLPIFIYVLMNSKINELSYLSILLCNLCDPDKRLSETG 100
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S3NP42_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP42_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.640e-22 Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1
Query: 1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADS-LGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
P++ +SPSSW S L + ++TLPCDKLDAL+A A IPAL+R+EH G D+ LGADDFLPIFI+VLVN+ V + V+ TLCDP + + E G
Sbjct: 677 PIQHISPSSWESAIYQLANIGAYTLPCDKLDALLAAAKEIPALYRVEH--PGTDTHLGADDFLPIFIYVLVNAKVPDLLHLQHVLCTLCDPDKRLSETG 773
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: F0XY90_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY90_AURAN) HSP 1 Score: 97.4 bits (241), Expect = 1.790e-21 Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 1 PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
P+ +SPSSW S L + S+TLPCDKLDAL+A A IP L+R+EH + LGADDFLPIFI+VLVN+ + V+ TLCDP + + E G
Sbjct: 587 PVHHISPSSWESAIYQLSNIGSYTLPCDKLDALLAAAKEIPQLYRIEHPGT-ENHLGADDFLPIFIYVLVNADIPNLSYLQKVLCTLCDPDKRLSETG 683
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S0TBT3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TBT3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.010e-17 Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 4 LKSLSPSSWYSVTRLL-HAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
++ SPS W SV R+L + TLPC KL A+V A I LH EH +G + LGAD+FLPIFIF +V + +ER A S++++TLCD +GE G
Sbjct: 459 IEKTSPSHWQSVARILKQGVGMSTLPCVKLRAIVDAAREISRLHEREH--NGQELLGADEFLPIFIFCVVRAEMERPCALSILLQTLCDRINRIGEIG 554
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S3ZMF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMF8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.050e-17 Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 16 SPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
SPS W + L + S+TLPCD+LD L+A A IP + EH+ G + LG DDFLPIF++V+V +G+ ++ LCDP + + E G
Sbjct: 498 SPSKWEAAVYRLATVGSYTLPCDRLDVLLAAAREIPVIFAAEHK--GEEVLGGDDFLPIFVYVVVQAGIPDLRYLQTLLSALCDPDKRLSETG 588
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A4D9DGA1_9STRA (VPS9 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGA1_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.120e-15 Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 4 LKSLSPSSWYSVTRLLHAMSS--FTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
++++S SSW + L +S TLP DKLDALVA I A HR EH + LGAD+FLP+FI+V+ G+ R VA ++ L DP RMM EAG
Sbjct: 811 VENISISSWEAAVGHLRRLSGEITTLPSDKLDALVAAVREIHACHRREHGDATDLHLGADEFLPVFIYVVSQCGISRLVALKNMLAALGDPARMMSEAG 909
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A7S4RM26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RM26_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 7.350e-15 Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 16 SPSSWYSVTRLLH-AMSSFTLPCDKLDALVAVAHAIPALHRLEHRND--------------------GADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
SPS W SV+++LH + TLPC KL A+V + + L+ EH +D+L ADDFLPIFIF +V S +ER A +++ TLCDP + +GE G
Sbjct: 1091 SPSEWRSVSKILHEGVGRSTLPCAKLRAIVDASKEVARLYTEEHNQSISYNVFAGLSPSNLAPNIETQSDALSADDFLPIFIFCVVKSQIERPCALCVLLRTLCDPSKRIGETG 1204
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Match: A0A485LNM0_9STRA (Aste57867_21896 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNM0_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.390e-14 Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 16 SPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNDGADSLGADDFLPIFIFVLVNSGVERAVAQSLVVETLCDPKRMMGEAG 294
SP+ W R L + + LP DKL L+ A+AI AL++LEH +D L DDFLPIFI+V+V++ ++ + V+ L DP++ MGE+G
Sbjct: 619 SPTQWGDAVRALREIDAMNLPVDKLRKLLDAANAIHALYQLEHGDDKV--LSGDDFLPIFIYVIVHAQLQNPLVLLRVLNVLSDPEKRMGESG 709 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig202185.5723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig202185.5723.1 >prot_H-elongata_contig202185.5723.1 ID=prot_H-elongata_contig202185.5723.1|Name=mRNA_H-elongata_contig202185.5723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp PLKSLSPSSWYSVTRLLHAMSSFTLPCDKLDALVAVAHAIPALHRLEHRNback to top mRNA from alignment at H-elongata_contig202185:1..1024+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig202185.5723.1 ID=mRNA_H-elongata_contig202185.5723.1|Name=mRNA_H-elongata_contig202185.5723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1024bp|location=Sequence derived from alignment at H-elongata_contig202185:1..1024+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig202185:1..1024+ >mRNA_H-elongata_contig202185.5723.1 ID=mRNA_H-elongata_contig202185.5723.1|Name=mRNA_H-elongata_contig202185.5723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig202185:1..1024+ (Himanthalia elongata Himel1 dioecious)back to top |