mRNA_H-elongata_contig20201.5715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20201.5715.1
Unique NamemRNA_H-elongata_contig20201.5715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20201.5715.1 vs. uniprot
Match: A0A7S2RBK6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBK6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.290e-17
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 DLCLGMAMGISAEQLVIFLASFRDVVSTADIVLFLEAPVNSRSKEVIDRYGAIGLEIEQVRLEPDFLRHRHSSSLRWVLAQRFLDAKIANYKNILVMDVGETFFQANP 324
            DL +G+  GIS E L +F  S R V  +A +VL+L++P+    + +++RY    LE     +EP FLR  H S+ RW L  R+L      Y+ +++ DV +T FQA+P
Sbjct:   32 DLVVGLGTGISPENLAVFCGSLRAVSPSAALVLYLDSPLPELHRRIVERYDVTALEFSVSLIEPAFLRKYHPSNYRWPLIHRYLKDHANAYRRVVLADVRDTMFQADP 139
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BLAST of mRNA_H-elongata_contig20201.5715.1 vs. uniprot
Match: A0A0H5RB21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RB21_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.250e-13
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:    1 DLCLGMAMGISAEQLVIFLASFRDVVSTADIVLFLEAPVNSRSKEVIDRYGAIGLEIEQVRLEPDFLRHRHSSSLRWVLAQRFLDA-KIANYKNILVMDVGETFFQANPLHITGRD 345
            D+CLGMA GIS + LV+F+ SFR+  + A +VLF+        K  ++ +    + +    + P  +R  H S+ RWVL + F+ A K+     +L++DV +T FQ++P  I   D
Sbjct:   83 DICLGMASGISLQDLVVFVKSFREATNDARLVLFMGIAAPEEHKRFLNEHDVETVLVNFDTMFPTQIRKFHPSNYRWVLLRNFVSAAKLNPMSRVLLVDVRDTVFQSDPFEIISPD 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20201.5715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2RBK6_9STRA6.290e-1737.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0H5RB21_9EUKA1.250e-1334.48Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20201contigH-elongata_contig20201:5862..6453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D8LAW0
EggNOG OGs2DVCF@1,2S6N3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20201.5715.1prot_H-elongata_contig20201.5715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20201 5877..6453 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.7756734-UTR-H-elongata_contig20201:5861..58761622930136.7756734-UTR-H-elongata_contig20201:5861..5876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20201 5862..5876 +
1691679294.9731529-UTR-H-elongata_contig20201:5861..58761691679294.9731529-UTR-H-elongata_contig20201:5861..5876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20201 5862..5876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.7930212-CDS-H-elongata_contig20201:5876..60071622930136.7930212-CDS-H-elongata_contig20201:5876..6007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20201 5877..6007 +
1691679294.9838321-CDS-H-elongata_contig20201:5876..60071691679294.9838321-CDS-H-elongata_contig20201:5876..6007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20201 5877..6007 +
1622930136.810485-CDS-H-elongata_contig20201:6236..64531622930136.810485-CDS-H-elongata_contig20201:6236..6453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20201 6237..6453 +
1691679294.9918792-CDS-H-elongata_contig20201:6236..64531691679294.9918792-CDS-H-elongata_contig20201:6236..6453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20201 6237..6453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20201.5715.1

>prot_H-elongata_contig20201.5715.1 ID=prot_H-elongata_contig20201.5715.1|Name=mRNA_H-elongata_contig20201.5715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MAMGISAEQLVIFLASFRDVVSTADIVLFLEAPVNSRSKEVIDRYGAIGL
EIEQVRLEPDFLRHRHSSSLRWVLAQRFLDAKIANYKNILVMDVGETFFQ
ANPLHITGRDGGRIC*
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mRNA from alignment at H-elongata_contig20201:5862..6453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20201.5715.1 ID=mRNA_H-elongata_contig20201.5715.1|Name=mRNA_H-elongata_contig20201.5715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at H-elongata_contig20201:5862..6453+ (Himanthalia elongata Himel1 dioecious)
GACCTTTGCCTGGGTATGGCAATGGGGATCAGCGCTGAGCAGCTCGTAAT
ATTCCTAGCGTCTTTCCGTGACGTGGTGTCCACGGCGGATATAGTCCTGT
TTCTCGAGGCACCGGTAAACTCCAGATCCAAAGAGGTTATCGATAGGTGC
AAAATGAAGTCTGAAGCTCTGGTGTTGCCAGTAATTTCAGAGAGAATCAC
AAACCGAAAATAGACACGTTCGGCCGGCCGCTATGTACTGTACCTCCTGT
TTCGCTACATGCGTGGTTGAAGGAAAGTACTAGACAGGAAACCATAGACA
GATATGTGCAAATCACCAGGGATTGAGTAGCTTCGGGTAAACTCAGCCAG
CCTTTCGTGGCGGTTAATTAACCAGATACGGCGCAATCGGCTTAGAGATC
GAACAAGTTAGACTGGAACCGGACTTTCTTCGTCACCGCCATTCGTCGTC
CCTGCGCTGGGTGTTGGCTCAGCGATTCCTAGACGCCAAGATTGCGAACT
ACAAAAATATCCTGGTCATGGACGTGGGTGAAACATTTTTTCAGGCGAAC
CCCTTGCATATTACTGGAAGAGATGGAGGTAGGATATGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20201:5862..6453+

>mRNA_H-elongata_contig20201.5715.1 ID=mRNA_H-elongata_contig20201.5715.1|Name=mRNA_H-elongata_contig20201.5715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig20201:5862..6453+ (Himanthalia elongata Himel1 dioecious)
ATGGCAATGGGGATCAGCGCTGAGCAGCTCGTAATATTCCTAGCGTCTTT
CCGTGACGTGGTGTCCACGGCGGATATAGTCCTGTTTCTCGAGGCACCGG
TAAACTCCAGATCCAAAGAGGTTATCGATAGATGGCAATGGGGATCAGCG
CTGAGCAGCTCGTAATATTCCTAGCGTCTTTCCGTGACGTGGTGTCCACG
GCGGATATAGTCCTGTTTCTCGAGGCACCGGTAAACTCCAGATCCAAAGA
GGTTATCGATAGATACGGCGCAATCGGCTTAGAGATCGAACAAGTTAGAC
TGGAACCGGACTTTCTTCGTCACCGCCATTCGTCGTCCCTGCGCTGGGTG
TTGGCTCAGCGATTCCTAGACGCCAAGATTGCGAACTACAAAAATATCCT
GGTCATGGACGTGGGTGAAACATTTTTTCAGGCGAACCCCTTGCATATTA
CTGGAAGAGATGGAGGTAGGATATGTTGAATACGGCGCAATCGGCTTAGA
GATCGAACAAGTTAGACTGGAACCGGACTTTCTTCGTCACCGCCATTCGT
CGTCCCTGCGCTGGGTGTTGGCTCAGCGATTCCTAGACGCCAAGATTGCG
AACTACAAAAATATCCTGGTCATGGACGTGGGTGAAACATTTTTTCAGGC
GAACCCCTTGCATATTACTGGAAGAGATGGAGGTAGGATATGTTGA
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