mRNA_H-elongata_contig201986.5714.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.250e-28 Identity = 74/172 (43.02%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K++ YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 69 KFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 238
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA) HSP 1 Score: 115 bits (287), Expect = 8.180e-28 Identity = 73/171 (42.69%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEEQMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KD+G R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ +E +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+++D+ D RRSVSG +LML
Sbjct: 132 KFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGV-NLTKADEPQT-EEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSNADWAGNRDDRRSVSGMLLML 299
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 114 bits (286), Expect = 9.120e-28 Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ +G + + R + I Y ESI++K + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 21 KFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 190
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.390e-27 Identity = 74/172 (43.02%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ +G N + R + I Q Y ESI++K+ + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ + TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 602 KFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 771
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.120e-27 Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LM+
Sbjct: 101 KFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMM 270
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.190e-27 Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPK-EEQMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KD+G R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ + + +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 132 KFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 301
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA) HSP 1 Score: 113 bits (283), Expect = 6.110e-27 Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ + + + R + I Q Y ESI++K + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 77 KFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 246
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 115 bits (288), Expect = 7.950e-27 Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ + TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 358 KFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLML 527
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3Q978_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q978_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.200e-26 Identity = 73/171 (42.69%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEEQMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KD+G R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ +E +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+++D+ D RRSVSG +LML
Sbjct: 526 KFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGV-NLTKADEPQT-EEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSNADWAGNRDDRRSVSGMLLML 693
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.220e-26 Identity = 74/172 (43.02%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 1 RFKLKDMGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 495
+F++KDMG R+ +G + + R + I Q Y ESI++K + K P GV L+KADEP+ +++ +M+ PYR VG+LM+ A TR DI+ AV ++RF ENPG A +K+++YLL TKD GI Y G G +EAY+D+D+ D RRSVSG +LML
Sbjct: 624 KFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLML 793 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig201986.5714.1 >prot_H-elongata_contig201986.5714.1 ID=prot_H-elongata_contig201986.5714.1|Name=mRNA_H-elongata_contig201986.5714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp MGDTRYYMGCNRKAREVKIGQHLYVESIVEKLDIKKESKIPATSGVPTLSback to top mRNA from alignment at H-elongata_contig201986:598..1092+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig201986.5714.1 ID=mRNA_H-elongata_contig201986.5714.1|Name=mRNA_H-elongata_contig201986.5714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig201986:598..1092+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig201986:598..1092+ >mRNA_H-elongata_contig201986.5714.1 ID=mRNA_H-elongata_contig201986.5714.1|Name=mRNA_H-elongata_contig201986.5714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig201986:598..1092+ (Himanthalia elongata Himel1 dioecious)back to top |