mRNA_H-elongata_contig201984.5713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201984.5713.1
Unique NamemRNA_H-elongata_contig201984.5713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig201984.5713.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.960e-21
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    7 EEAKKKDVKKKEAPKEIALLDAKRAMNTSIAIARIKMSYAETRQAIMNVDETALASNVVQSLQ 195
            EEAKKKDV KKEAPKEI+LLD KRAMNTSIAIARIKM+YAETRQA+MN+DET L+SNV+QSLQ
Sbjct: 3128 EEAKKKDV-KKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQ 3189
[Close]
BLAST of mRNA_H-elongata_contig201984.5713.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.980e-21
Identity = 53/63 (84.13%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    7 EEAKKKDVKKKEAPKEIALLDAKRAMNTSIAIARIKMSYAETRQAIMNVDETALASNVVQSLQ 195
            +EAKKKDV KKEAPKEI+LLD KRAMNTSIAIARIKM+YAETRQA+MN+DET L+SNV+QSLQ
Sbjct: 2256 DEAKKKDV-KKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQ 2317
[Close]
BLAST of mRNA_H-elongata_contig201984.5713.1 vs. uniprot
Match: A0A7R9YER3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YER3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.630e-5
Identity = 29/65 (44.62%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    4 AEEAKKKDVKKKEAPKE-IALLDAKRAMNTSIAIARIKMSYAETRQAIMNVDETALASNVVQSLQ 195
            A +AK K   KK A KE +AL+D +RA N  IAIARIK++YA+ R+ I N+++++ ++  +++LQ
Sbjct:    5 ATQAKPKKAAKKSARKEKVALIDGRRATNAGIAIARIKLTYAQMREKITNLEDSSFSTVQMRTLQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201984.5713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE1.960e-2185.71FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI4.980e-2184.13Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7R9YER3_9STRA1.630e-544.62Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201984contigH-elongata_contig201984:457..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog2880.D8LT97
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.6188395-CDS-H-elongata_contig201984:456..6721622930136.6188395-CDS-H-elongata_contig201984:456..672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201984 457..672 +
1691679294.9355204-CDS-H-elongata_contig201984:456..6721691679294.9355204-CDS-H-elongata_contig201984:456..672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201984 457..672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201984.5713.1prot_H-elongata_contig201984.5713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201984 457..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201984.5713.1

>prot_H-elongata_contig201984.5713.1 ID=prot_H-elongata_contig201984.5713.1|Name=mRNA_H-elongata_contig201984.5713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QAEEAKKKDVKKKEAPKEIALLDAKRAMNTSIAIARIKMSYAETRQAIMN
VDETALASNVVQSLQVTYLVN*
back to top

mRNA from alignment at H-elongata_contig201984:457..672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201984.5713.1 ID=mRNA_H-elongata_contig201984.5713.1|Name=mRNA_H-elongata_contig201984.5713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig201984:457..672+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGAGGAGGCGAAGAAGAAGGACGTTAAAAAGAAGGAGGCACCGAA
GGAGATCGCGCTGCTGGACGCGAAGCGCGCCATGAACACGTCCATCGCGA
TCGCGAGGATCAAGATGAGCTACGCCGAGACCAGGCAGGCCATCATGAAC
GTGGACGAGACCGCCCTGGCGTCCAACGTGGTGCAGTCGTTGCAGGTGAC
ATACCTTGTTAATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig201984:457..672+

>mRNA_H-elongata_contig201984.5713.1 ID=mRNA_H-elongata_contig201984.5713.1|Name=mRNA_H-elongata_contig201984.5713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig201984:457..672+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGAGGAGGCGAAGAAGAAGGACGTTAAAAAGAAGGAGGCACCGAA
GGAGATCGCGCTGCTGGACGCGAAGCGCGCCATGAACACGTCCATCGCGA
TCGCGAGGATCAAGATGAGCTACGCCGAGACCAGGCAGGCCATCATGAAC
GTGGACGAGACCGCCCTGGCGTCCAACGTGGTGCAGTCGTTGCAGGTGAC
ATACCTTGTTAATTGACAGGCGGAGGAGGCGAAGAAGAAGGACGTTAAAA
AGAAGGAGGCACCGAAGGAGATCGCGCTGCTGGACGCGAAGCGCGCCATG
AACACGTCCATCGCGATCGCGAGGATCAAGATGAGCTACGCCGAGACCAG
GCAGGCCATCATGAACGTGGACGAGACCGCCCTGGCGTCCAACGTGGTGC
AGTCGTTGCAGGTGACATACCTTGTTAATTGA
back to top