mRNA_H-elongata_contig201983.5712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201983.5712.1
Unique NamemRNA_H-elongata_contig201983.5712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: D7FHQ9_ECTSI (Translocation protein SEC62 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHQ9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.400e-22
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+VS +NQF+  GY+TWIFLGSQRLSHLFTALIIIGFL+ITCFPIWPRILKV
Sbjct:  101 LEVSGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKV 152
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A835ZAL0_9STRA (Translocation protein SEC62 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.180e-16
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+VSRD  F   GYYTWI+ GSQ LSHL T  II+GFL ITCFPIWP+ LK+
Sbjct:  100 LEVSRDQTFISTGYYTWIYQGSQTLSHLMTTAIIVGFLTITCFPIWPQFLKI 151
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A8K1FLX3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLX3_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 2.580e-13
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L  SR+++F  DGYYTW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV
Sbjct:  106 LTPSRNHEFAFDGYYTWMYEGSKTLRNIMTALLIIGFLVITCFPIWPQWAKV 157
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A3M6VLQ6_9STRA (Translocation protein SEC62 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLQ6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.790e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+ + D +F  DGYYTW++ GS+ L ++ TAL+IIGFLIITCFPIWP+  KV
Sbjct:  108 LKPTPDQEFSPDGYYTWMYEGSKTLRNIMTALLIIGFLIITCFPIWPQWAKV 159
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: B8C1X7_THAPS (Translocation protein SEC62 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1X7_THAPS)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L++SR   F++  Y+TWI+ G+++ SHL T  ++IGFL  TCFPIWP  LKV
Sbjct:   97 LEISRVRDFDESAYFTWIYEGNKKFSHLMTTCLVIGFLCCTCFPIWPNFLKV 148
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A2D4BSF8_PYTIN (Translocation protein SEC62 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSF8_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 3.370e-12
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L  SR+++F  DGYYTW++ G + + ++ TAL+IIGFLIITCFPIWP+  K+
Sbjct:   91 LTPSRNHEFAFDGYYTWMYEGPKTMRNILTALLIIGFLIITCFPIWPQWAKI 142
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: K0TGD9_THAOC (Translocation protein SEC62 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGD9_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 3.490e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+VSR   F++  Y+TWI+ G+++ SHL T  +IIGFL  TCFPIWP  LKV
Sbjct:   99 LEVSRVRDFDESAYFTWIYEGNKKFSHLMTTGLIIGFLCCTCFPIWPNFLKV 150
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A662WBW0_9STRA (Translocation protein SEC62 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WBW0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.490e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+ S    F  DGYYTW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV
Sbjct:   93 LKPSPKQDFAPDGYYTWMYEGSKTLRNIMTALLIIGFLVITCFPIWPQWAKV 144
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A7R9YBG5_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBG5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.780e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+  +   F +DG+YTWI+ GSQ +S+L T  +I+GFL  TCFPIWP+ +KV
Sbjct:   93 LEPKQSTSFTEDGFYTWIYQGSQTMSNLATVALIVGFLFFTCFPIWPQFMKV 144
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BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A3F2S5J4_9STRA (Translocation protein SEC62 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S5J4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 156
            L+ +    F  +GYYTW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV
Sbjct:  108 LKPTPKQDFAPEGYYTWMYEGSKTLRNVMTALLIIGFLVITCFPIWPQWAKV 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FHQ9_ECTSI3.400e-2284.62Translocation protein SEC62 n=2 Tax=Ectocarpus Tax... [more]
A0A835ZAL0_9STRA3.180e-1667.31Translocation protein SEC62 n=1 Tax=Tribonema minu... [more]
A0A8K1FLX3_PYTOL2.580e-1359.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VLQ6_9STRA2.790e-1359.62Translocation protein SEC62 n=1 Tax=Peronospora ef... [more]
B8C1X7_THAPS2.460e-1251.92Translocation protein SEC62 n=1 Tax=Thalassiosira ... [more]
A0A2D4BSF8_PYTIN3.370e-1255.77Translocation protein SEC62 (Fragment) n=1 Tax=Pyt... [more]
K0TGD9_THAOC3.490e-1255.77Translocation protein SEC62 n=1 Tax=Thalassiosira ... [more]
A0A662WBW0_9STRA3.490e-1257.69Translocation protein SEC62 n=1 Tax=Nothophytophth... [more]
A0A7R9YBG5_9STRA4.780e-1251.92Translocation protein SEC62 (Fragment) n=1 Tax=Pin... [more]
A0A3F2S5J4_9STRA4.080e-1153.85Translocation protein SEC62 n=1 Tax=Phytophthora k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201983contigH-elongata_contig201983:644..799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.8e-17
Seed eggNOG ortholog2880.D7FHQ9
Preferred nameSEC62
KEGG koko:K09490,ko:K12275
KEGG TC1.A.15.1,1.A.15.2,1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006810,GO:0006886,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0023052,GO:0030867,GO:0031090,GO:0031204,GO:0031205,GO:0031207,GO:0031224,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0038023,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060089,GO:0065002,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098588,GO:0098796,GO:0098827
EggNOG free text desc.posttranslational protein targeting to endoplasmic reticulum membrane
EggNOG OGsCOG5232@1,KOG2927@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110,ko04131,ko04147
Hectar predicted targeting categorysignal anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.5822957-CDS-H-elongata_contig201983:643..7991622930136.5822957-CDS-H-elongata_contig201983:643..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201983 644..799 -
1691679294.914859-CDS-H-elongata_contig201983:643..7991691679294.914859-CDS-H-elongata_contig201983:643..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201983 644..799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201983.5712.1prot_H-elongata_contig201983.5712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201983 644..799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201983.5712.1

>prot_H-elongata_contig201983.5712.1 ID=prot_H-elongata_contig201983.5712.1|Name=mRNA_H-elongata_contig201983.5712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRIL
KV
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mRNA from alignment at H-elongata_contig201983:644..799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201983.5712.1 ID=mRNA_H-elongata_contig201983.5712.1|Name=mRNA_H-elongata_contig201983.5712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig201983:644..799- (Himanthalia elongata Himel1 dioecious)
TTGCAGGTCAGCAGGGACAACCAGTTCGAGAAGGACGGCTACTACACGTG
GATATTCTTGGGCTCCCAGCGATTAAGCCACCTTTTCACCGCGCTGATCA
TCATAGGCTTTCTCATCATCACCTGCTTCCCCATATGGCCGCGCATCCTT
AAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig201983:644..799-

>mRNA_H-elongata_contig201983.5712.1 ID=mRNA_H-elongata_contig201983.5712.1|Name=mRNA_H-elongata_contig201983.5712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig201983:644..799- (Himanthalia elongata Himel1 dioecious)
TTGCAGGTCAGCAGGGACAACCAGTTCGAGAAGGACGGCTACTACACGTG
GATATTCTTGGGCTCCCAGCGATTAAGCCACCTTTTCACCGCGCTGATCA
TCATAGGCTTTCTCATCATCACCTGCTTCCCCATATGGCCGCGCATCCTT
AAGGTGTTGCAGGTCAGCAGGGACAACCAGTTCGAGAAGGACGGCTACTA
CACGTGGATATTCTTGGGCTCCCAGCGATTAAGCCACCTTTTCACCGCGC
TGATCATCATAGGCTTTCTCATCATCACCTGCTTCCCCATATGGCCGCGC
ATCCTTAAGGTG
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