prot_H-elongata_contig201983.5712.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig201983.5712.1
Unique Nameprot_H-elongata_contig201983.5712.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: D7FHQ9_ECTSI (Translocation protein SEC62 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHQ9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.400e-22
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+VS +NQF+  GY+TWIFLGSQRLSHLFTALIIIGFL+ITCFPIWPRILKV
Sbjct:  101 LEVSGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKV 152          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A835ZAL0_9STRA (Translocation protein SEC62 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.180e-16
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+VSRD  F   GYYTWI+ GSQ LSHL T  II+GFL ITCFPIWP+ LK+
Sbjct:  100 LEVSRDQTFISTGYYTWIYQGSQTLSHLMTTAIIVGFLTITCFPIWPQFLKI 151          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A8K1FLX3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLX3_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 2.580e-13
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L  SR+++F  DGYYTW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV
Sbjct:  106 LTPSRNHEFAFDGYYTWMYEGSKTLRNIMTALLIIGFLVITCFPIWPQWAKV 157          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A3M6VLQ6_9STRA (Translocation protein SEC62 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLQ6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.790e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+ + D +F  DGYYTW++ GS+ L ++ TAL+IIGFLIITCFPIWP+  KV
Sbjct:  108 LKPTPDQEFSPDGYYTWMYEGSKTLRNIMTALLIIGFLIITCFPIWPQWAKV 159          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: B8C1X7_THAPS (Translocation protein SEC62 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1X7_THAPS)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L++SR   F++  Y+TWI+ G+++ SHL T  ++IGFL  TCFPIWP  LKV
Sbjct:   97 LEISRVRDFDESAYFTWIYEGNKKFSHLMTTCLVIGFLCCTCFPIWPNFLKV 148          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A2D4BSF8_PYTIN (Translocation protein SEC62 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSF8_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 3.370e-12
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L  SR+++F  DGYYTW++ G + + ++ TAL+IIGFLIITCFPIWP+  K+
Sbjct:   91 LTPSRNHEFAFDGYYTWMYEGPKTMRNILTALLIIGFLIITCFPIWPQWAKI 142          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: K0TGD9_THAOC (Translocation protein SEC62 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGD9_THAOC)

HSP 1 Score: 68.2 bits (165), Expect = 3.490e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+VSR   F++  Y+TWI+ G+++ SHL T  +IIGFL  TCFPIWP  LKV
Sbjct:   99 LEVSRVRDFDESAYFTWIYEGNKKFSHLMTTGLIIGFLCCTCFPIWPNFLKV 150          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A662WBW0_9STRA (Translocation protein SEC62 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WBW0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.490e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+ S    F  DGYYTW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV
Sbjct:   93 LKPSPKQDFAPDGYYTWMYEGSKTLRNIMTALLIIGFLVITCFPIWPQWAKV 144          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A7R9YBG5_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBG5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.780e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+  +   F +DG+YTWI+ GSQ +S+L T  +I+GFL  TCFPIWP+ +KV
Sbjct:   93 LEPKQSTSFTEDGFYTWIYQGSQTMSNLATVALIVGFLFFTCFPIWPQFMKV 144          
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Match: A0A3F2S5J4_9STRA (Translocation protein SEC62 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S5J4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRILKV 52
            L+ +    F  +GYYTW++ GS+ L ++ TAL+IIGFL+ITCFPIWP+  KV
Sbjct:  108 LKPTPKQDFAPEGYYTWMYEGSKTLRNVMTALLIIGFLVITCFPIWPQWAKV 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201983.5712.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FHQ9_ECTSI3.400e-2284.62Translocation protein SEC62 n=2 Tax=Ectocarpus Tax... [more]
A0A835ZAL0_9STRA3.180e-1667.31Translocation protein SEC62 n=1 Tax=Tribonema minu... [more]
A0A8K1FLX3_PYTOL2.580e-1359.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VLQ6_9STRA2.790e-1359.62Translocation protein SEC62 n=1 Tax=Peronospora ef... [more]
B8C1X7_THAPS2.460e-1251.92Translocation protein SEC62 n=1 Tax=Thalassiosira ... [more]
A0A2D4BSF8_PYTIN3.370e-1255.77Translocation protein SEC62 (Fragment) n=1 Tax=Pyt... [more]
K0TGD9_THAOC3.490e-1255.77Translocation protein SEC62 n=1 Tax=Thalassiosira ... [more]
A0A662WBW0_9STRA3.490e-1257.69Translocation protein SEC62 n=1 Tax=Nothophytophth... [more]
A0A7R9YBG5_9STRA4.780e-1251.92Translocation protein SEC62 (Fragment) n=1 Tax=Pin... [more]
A0A3F2S5J4_9STRA4.080e-1153.85Translocation protein SEC62 n=1 Tax=Phytophthora k... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004728Translocation protein Sec62PFAMPF03839Sec62coord: 1..51
e-value: 1.7E-10
score: 40.8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201983contigH-elongata_contig201983:644..799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201983.5712.1mRNA_H-elongata_contig201983.5712.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig201983 644..799 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig201983.5712.1 ID=prot_H-elongata_contig201983.5712.1|Name=mRNA_H-elongata_contig201983.5712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
LQVSRDNQFEKDGYYTWIFLGSQRLSHLFTALIIIGFLIITCFPIWPRIL
KV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004728Sec62