mRNA_H-elongata_contig20179.5699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20179.5699.1
Unique NamemRNA_H-elongata_contig20179.5699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A6H5JKH9_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.080e-31
Identity = 83/138 (60.14%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    7 TTADVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRG-SEAVMGFAKSLEA-KKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQPE 414
            T ADVER+DRELARLFLEMFDVIG+QVVVAF +DE+A+KA  VW KG P+KG+VT ++PR  +GP LKRG + A+ GFA  +EA KK  XXXXXX                  G   TAR+ PPGTEVLLVVAPKQ E
Sbjct:  116 TAADVERADRELARLFLEMFDVIGDQVVVAFPTDEDAKKAIKVWSKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEASKKAKXXXXXXXXXXXXXXXXXXXXXXRTG--TTARVVPPGTEVLLVVAPKQQE 251          
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: D8LR98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR98_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 3.490e-27
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    7 TTADVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRG-SEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKP 348
            T ADVER+DRELARLFLEMFDVIG+QVVVAF +DE+A+KA   W KG P+KG+VT ++PR  +GP LKRG + A+ GFA  +EA K          G  R     GGG    G P
Sbjct:  116 TAADVERADRELARLFLEMFDVIGDQVVVAFPTDEDAKKATKAWNKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEASKKAQKKEQRRAGSSR-----GGGARTPGAP 225          
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A836CFU0_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.230e-13
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   16 DVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQPE 414
            DVE+SDRELARLF+EMFD IG+  VVAF +D++A  A  +W  G+ +KG V S+ P+  +     + S A  GFAK LEA            G D   P              + + P GTEV ++VAP++ E
Sbjct:   38 DVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGS-YKGTVQSMEPKKSKVKKSGKKSRAG-GFAKKLEA----------ALGDDTEGP--------------SAVVPAGTEVFVLVAPQEKE 144          
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A6V1TW35_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TW35_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 5.180e-9
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   19 VERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQ 408
            VE+SDRELARL +EMF  +GE +V  F SD++ +KA++ W  G  ++G + ++ P+  +G   +RG     GFA +++            +G D   P  G             + PPGTEV+L VAP Q
Sbjct:  105 VEKSDRELARLLVEMFQPLGESLVCTFPSDQQVKKAKSSW--GDQYEGTIKTLTPKKTKGG-KRRGKG---GFAAAVKE----------AEGADAVGPLNG-------------VLPPGTEVVLAVAPSQ 205          
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A7S2V579_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V579_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.060e-6
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   25 RSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAP 402
            ++DRELARL +EMF  +GE +V AFS+D++A++A+  W + + ++G++ ++ P        K+  + +    K  + +K        E  GD S                + I P GTEVL+VVAP
Sbjct:  110 KNDRELARLLVEMFQPLGENLVCAFSTDKQAKQAKKAW-ENSFYQGKIQALVP--------KKDDDLMFSRRKFKKGRKSFAAALDEEFNGDNSF--------------ASSILPKGTEVLIVVAP 212          
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A1Z5KBU0_FISSO (DUF1995 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBU0_FISSO)

HSP 1 Score: 53.5 bits (127), Expect = 1.180e-5
Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   16 DVERSDRELARLFLEMFDVIG-EQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEA 255
            D +RSDRELARLF++MF  +G +++ V F  D++A++A+ +W   A    R+ ++N R ++    +R ++  +GFA  L A
Sbjct:   70 DFQRSDRELARLFVDMFQPVGGDRIAVIFKDDDQAKQAKNLWKGDASAASRILALN-RGKK----QRTAKKSLGFANKLAA 145          
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A7S4G6C5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G6C5_9EUGL)

HSP 1 Score: 52.4 bits (124), Expect = 3.510e-5
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   19 VERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAK 258
            +ERSDRELARLF+EMFD IGE VV+ F+ +  A++A+  W   A  KG + +++      P  K  ++   GF    +AK
Sbjct:  228 MERSDRELARLFVEMFDPIGESVVLVFNENRLAKEAKRKW---ATTKGAIIALD-----SPTGKPAAKPKTGFGVQKKAK 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JKH9_9PHAE2.080e-3160.14DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LR98_ECTSI3.490e-2754.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFU0_9STRA3.230e-1339.85DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6V1TW35_HETAK5.180e-935.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V579_9STRA1.060e-631.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KBU0_FISSO1.180e-537.04DUF1995 domain-containing protein n=2 Tax=Fistulif... [more]
A0A7S4G6C5_9EUGL3.510e-541.25Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20179contigH-elongata_contig20179:97..791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_003330.1
Exons2
Model size415
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.990154-CDS-H-elongata_contig20179:96..1831622930134.990154-CDS-H-elongata_contig20179:96..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20179 97..183 +
1691679294.2382271-CDS-H-elongata_contig20179:96..1831691679294.2382271-CDS-H-elongata_contig20179:96..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20179 97..183 +
1622930135.0065057-CDS-H-elongata_contig20179:464..7911622930135.0065057-CDS-H-elongata_contig20179:464..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20179 465..791 +
1691679294.254121-CDS-H-elongata_contig20179:464..7911691679294.254121-CDS-H-elongata_contig20179:464..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20179 465..791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20179.5699.1prot_H-elongata_contig20179.5699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20179 97..791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20179.5699.1

>prot_H-elongata_contig20179.5699.1 ID=prot_H-elongata_contig20179.5699.1|Name=mRNA_H-elongata_contig20179.5699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MATTADVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGA
PFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKKKKKASAGEKGGD
RSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQPE
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mRNA from alignment at H-elongata_contig20179:97..791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20179.5699.1 ID=mRNA_H-elongata_contig20179.5699.1|Name=mRNA_H-elongata_contig20179.5699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=695bp|location=Sequence derived from alignment at H-elongata_contig20179:97..791+ (Himanthalia elongata Himel1 dioecious)
ATGGCAACCACCGCCGACGTTGAACGCTCTGATCGGGAGCTTGCGAGGCT CTTCCTCGAGATGTTCGACGTGATCGGGGAACAAGTGGTGAGCGAGGGAG GAAACGCGCGAGTCTGGCTTTTTATTGTTCCAAGTGCCGTTGGTCGTTTG ATCCCGTCGTCCATTGCAGATCCCTCCGCTAGCTATACCGTTCCGTTCAA GGAGCGATCGAGTGATGCCATTGGCGACGACATTCAACTCAGATCCAGAC GACGTCTCCTATGCTGCACGGAAACCAACGGCTTGGTTGGCCCCCGTACT AGCCACGACGTTCAGCGCTCCGACGCGATACTCGATTGTGAACCCCGCGC TGAAAAACGACGACACAGGTGGTCGCCTTCTCTTCCGACGAGGAAGCACA AAAGGCCGAGACGGTCTGGGTCAAGGGTGCGCCGTTTAAGGGTAGGGTAA CCTCCATAAACCCAAGGGCGCAGAGGGGGCCGCCGCTAAAGCGGGGCAGC GAAGCTGTCATGGGATTCGCAAAAAGCCTCGAGGCCAAGAAGAAGAAGAA AAAGGCCTCCGCTGGCGAAAAGGGAGGAGATAGAAGCTCTCCGGGAAAGG GCGGTGGCGGGACGCTTGCGGGGAAGCCAGCGACGGCTCGGATCGCGCCC CCTGGGACGGAGGTATTGCTGGTGGTGGCGCCAAAGCAGCCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig20179:97..791+

>mRNA_H-elongata_contig20179.5699.1 ID=mRNA_H-elongata_contig20179.5699.1|Name=mRNA_H-elongata_contig20179.5699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig20179:97..791+ (Himanthalia elongata Himel1 dioecious)
ATGGCAACCACCGCCGACGTTGAACGCTCTGATCGGGAGCTTGCGAGGCT
CTTCCTCGAGATGTTCGACGTGATCGGGGAACAAGTGATGGCAACCACCG
CCGACGTTGAACGCTCTGATCGGGAGCTTGCGAGGCTCTTCCTCGAGATG
TTCGACGTGATCGGGGAACAAGTGGTGGTCGCCTTCTCTTCCGACGAGGA
AGCACAAAAGGCCGAGACGGTCTGGGTCAAGGGTGCGCCGTTTAAGGGTA
GGGTAACCTCCATAAACCCAAGGGCGCAGAGGGGGCCGCCGCTAAAGCGG
GGCAGCGAAGCTGTCATGGGATTCGCAAAAAGCCTCGAGGCCAAGAAGAA
GAAGAAAAAGGCCTCCGCTGGCGAAAAGGGAGGAGATAGAAGCTCTCCGG
GAAAGGGCGGTGGCGGGACGCTTGCGGGGAAGCCAGCGACGGCTCGGATC
GCGCCCCCTGGGACGGAGGTATTGCTGGTGGTGGCGCCAAAGCAGCCCGA
GGTGGTCGCCTTCTCTTCCGACGAGGAAGCACAAAAGGCCGAGACGGTCT
GGGTCAAGGGTGCGCCGTTTAAGGGTAGGGTAACCTCCATAAACCCAAGG
GCGCAGAGGGGGCCGCCGCTAAAGCGGGGCAGCGAAGCTGTCATGGGATT
CGCAAAAAGCCTCGAGGCCAAGAAGAAGAAGAAAAAGGCCTCCGCTGGCG
AAAAGGGAGGAGATAGAAGCTCTCCGGGAAAGGGCGGTGGCGGGACGCTT
GCGGGGAAGCCAGCGACGGCTCGGATCGCGCCCCCTGGGACGGAGGTATT
GCTGGTGGTGGCGCCAAAGCAGCCCGAG
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