mRNA_H-elongata_contig20179.5699.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A6H5JKH9_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH9_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.080e-31 Identity = 83/138 (60.14%), Postives = 97/138 (70.29%), Query Frame = 1
Query: 7 TTADVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRG-SEAVMGFAKSLEA-KKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQPE 414
T ADVER+DRELARLFLEMFDVIG+QVVVAF +DE+A+KA VW KG P+KG+VT ++PR +GP LKRG + A+ GFA +EA KK XXXXXX G TAR+ PPGTEVLLVVAPKQ E
Sbjct: 116 TAADVERADRELARLFLEMFDVIGDQVVVAFPTDEDAKKAIKVWSKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEASKKAKXXXXXXXXXXXXXXXXXXXXXXRTG--TTARVVPPGTEVLLVVAPKQQE 251
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: D8LR98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR98_ECTSI) HSP 1 Score: 110 bits (276), Expect = 3.490e-27 Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 1
Query: 7 TTADVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRG-SEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKP 348
T ADVER+DRELARLFLEMFDVIG+QVVVAF +DE+A+KA W KG P+KG+VT ++PR +GP LKRG + A+ GFA +EA K G R GGG G P
Sbjct: 116 TAADVERADRELARLFLEMFDVIGDQVVVAFPTDEDAKKATKAWNKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEASKKAQKKEQRRAGSSR-----GGGARTPGAP 225
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A836CFU0_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.230e-13 Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = 1
Query: 16 DVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQPE 414
DVE+SDRELARLF+EMFD IG+ VVAF +D++A A +W G+ +KG V S+ P+ + + S A GFAK LEA G D P + + P GTEV ++VAP++ E
Sbjct: 38 DVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGS-YKGTVQSMEPKKSKVKKSGKKSRAG-GFAKKLEA----------ALGDDTEGP--------------SAVVPAGTEVFVLVAPQEKE 144
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A6V1TW35_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TW35_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 5.180e-9 Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 19 VERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAPKQ 408
VE+SDRELARL +EMF +GE +V F SD++ +KA++ W G ++G + ++ P+ +G +RG GFA +++ +G D P G + PPGTEV+L VAP Q
Sbjct: 105 VEKSDRELARLLVEMFQPLGESLVCTFPSDQQVKKAKSSW--GDQYEGTIKTLTPKKTKGG-KRRGKG---GFAAAVKE----------AEGADAVGPLNG-------------VLPPGTEVVLAVAPSQ 205
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A7S2V579_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V579_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.060e-6 Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 25 RSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAKKXXXXXXXXEKGGDRSSPGKGGGGTLAGKPATARIAPPGTEVLLVVAP 402
++DRELARL +EMF +GE +V AFS+D++A++A+ W + + ++G++ ++ P K+ + + K + +K E GD S + I P GTEVL+VVAP
Sbjct: 110 KNDRELARLLVEMFQPLGENLVCAFSTDKQAKQAKKAW-ENSFYQGKIQALVP--------KKDDDLMFSRRKFKKGRKSFAAALDEEFNGDNSF--------------ASSILPKGTEVLIVVAP 212
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A1Z5KBU0_FISSO (DUF1995 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBU0_FISSO) HSP 1 Score: 53.5 bits (127), Expect = 1.180e-5 Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 16 DVERSDRELARLFLEMFDVIG-EQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEA 255
D +RSDRELARLF++MF +G +++ V F D++A++A+ +W A R+ ++N R ++ +R ++ +GFA L A
Sbjct: 70 DFQRSDRELARLFVDMFQPVGGDRIAVIFKDDDQAKQAKNLWKGDASAASRILALN-RGKK----QRTAKKSLGFANKLAA 145
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Match: A0A7S4G6C5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G6C5_9EUGL) HSP 1 Score: 52.4 bits (124), Expect = 3.510e-5 Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 19 VERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAPFKGRVTSINPRAQRGPPLKRGSEAVMGFAKSLEAK 258
+ERSDRELARLF+EMFD IGE VV+ F+ + A++A+ W A KG + +++ P K ++ GF +AK
Sbjct: 228 MERSDRELARLFVEMFDPIGESVVLVFNENRLAKEAKRKW---ATTKGAIIALD-----SPTGKPAAKPKTGFGVQKKAK 299 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20179.5699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20179.5699.1 >prot_H-elongata_contig20179.5699.1 ID=prot_H-elongata_contig20179.5699.1|Name=mRNA_H-elongata_contig20179.5699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MATTADVERSDRELARLFLEMFDVIGEQVVVAFSSDEEAQKAETVWVKGAback to top mRNA from alignment at H-elongata_contig20179:97..791+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20179.5699.1 ID=mRNA_H-elongata_contig20179.5699.1|Name=mRNA_H-elongata_contig20179.5699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=695bp|location=Sequence derived from alignment at H-elongata_contig20179:97..791+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20179:97..791+ >mRNA_H-elongata_contig20179.5699.1 ID=mRNA_H-elongata_contig20179.5699.1|Name=mRNA_H-elongata_contig20179.5699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig20179:97..791+ (Himanthalia elongata Himel1 dioecious)back to top |