mRNA_H-elongata_contig20175.5698.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: D7FI71_ECTSI (Ribosomal_L14e domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI71_ECTSI) HSP 1 Score: 129 bits (325), Expect = 4.900e-37 Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 1 QALIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ALI+GPDTGVPRQ+IPFKRLALTD+KL IQRNAR GTI AAK DL AKWEASSWAKK+AKKVKRA+MTDFDRFKV
Sbjct: 35 KALIEGPDTGVPRQLIPFKRLALTDFKLPIQRNARIGTIKAAAKEADLYAKWEASSWAKKKAKKVKRAQMTDFDRFKV 112
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A835YLN7_9STRA (Ribosomal protein L14-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN7_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 7.440e-25 Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ALIDGP+ TGV RQMIPFKRLALTD+K+ I RNAR GT+ KA D++AKW A++WA+KRA K KRA + D DRFK+
Sbjct: 35 KALIDGPEELTGVKRQMIPFKRLALTDFKVKILRNARQGTLKKAFAEADVLAKWGATAWARKRAAKAKRASLGDLDRFKL 114
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A6U6K629_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A6U6K629_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.630e-23 Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ LIDGP+ TGV RQ+IP+KR+ALTD K+++QR+ARA T+ A K D + KWE+SSWAKK A K KRA ++DFDRFKV
Sbjct: 35 KCLIDGPEEITGVSRQVIPYKRIALTDLKVNVQRSARAKTLKAAWKEGDTLNKWESSSWAKKLASKKKRANLSDFDRFKV 114
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A7S2AMT7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMT7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.050e-21 Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ LIDGP TGV RQ+IPFKR+ALTD+K+DI + A T+ A +A D++ KWE++SWAKK A K KRA ++DFDRFK+
Sbjct: 35 KCLIDGPRKLTGVQRQIIPFKRIALTDFKVDIPKAASQKTLTAAIEAADILGKWESTSWAKKLAAKKKRANLSDFDRFKL 114
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A4D9CRD2_9STRA (Ribosomal_L14e domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRD2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.750e-21 Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 7 LIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
L+DGPD+GV RQ+IP KR++LTD K+ I RNAR T+ KA E ++A+WE ++W KK K KRA +TDFDRFK+
Sbjct: 39 LVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWVTEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKL 114
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: F0YD47_AURAN (Ribosomal_L14e domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD47_AURAN) HSP 1 Score: 89.7 bits (221), Expect = 2.830e-21 Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 1 QALIDGP--DTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ L+DGP TGV RQ+IPFKR+ALTD + I +NAR T+NKA D++AKW+ASSWAKK A K KRA +TDF RF++
Sbjct: 33 KCLVDGPATKTGVARQVIPFKRVALTDIVVKIPKNARQKTLNKAWDEADVLAKWDASSWAKKLAAKKKRASLTDFQRFQL 112
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: W7TUK8_9STRA (Ribosomal protein l14 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUK8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 9.020e-21 Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query: 7 LIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
L+DGPD+GV RQ+IP KR++LTD K+ I RNAR T+ KA E ++A+WE ++W KK K KRA +TDFDRFK+
Sbjct: 101 LVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKL 176
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: B5Y4G9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4G9_PHATC) HSP 1 Score: 88.2 bits (217), Expect = 1.200e-20 Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ LIDGP+ TGV RQ+I +KRLALTD K+DIQRNAR ++ KA D M KWE+SSWAKK + RA ++DFDRFKV
Sbjct: 35 KCLIDGPESITGVTRQVISYKRLALTDLKVDIQRNARQKSLLKAWTEADTMNKWESSSWAKKLTARKTRAGLSDFDRFKV 114
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A6V2NE85_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NE85_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.510e-20 Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
+ LIDGP TGV RQ+I + R+ALTD K++IQRNARA T+ A D+ KW+ SSWAKK A K KRA ++DFDRFKV
Sbjct: 35 KCLIDGPTEITGVVRQVISYTRIALTDLKVNIQRNARAKTLKAAWAEADIQNKWDGSSWAKKLATKKKRASLSDFDRFKV 114
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A075ATE4_ROZAC (Ribosomal protein L14 domain-containing protein n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075ATE4_ROZAC) HSP 1 Score: 86.7 bits (213), Expect = 4.040e-20 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 4 ALIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
A++DGP TGV RQ + F+RLA+T +K+ + R +R+ TI K +AE + KWE +SWAKK A + KRA M+DFDRFK
Sbjct: 26 AIVDGPTTGVARQQLSFRRLAVTPFKVSVPRGSRSKTIKKVFEAEKIAEKWETTSWAKKLAVREKRAAMSDFDRFKA 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20175.5698.1 >prot_H-elongata_contig20175.5698.1 ID=prot_H-elongata_contig20175.5698.1|Name=mRNA_H-elongata_contig20175.5698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp QALIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAback to top mRNA from alignment at H-elongata_contig20175:6324..6866+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20175.5698.1 ID=mRNA_H-elongata_contig20175.5698.1|Name=mRNA_H-elongata_contig20175.5698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig20175:6324..6866+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20175:6324..6866+ >mRNA_H-elongata_contig20175.5698.1 ID=mRNA_H-elongata_contig20175.5698.1|Name=mRNA_H-elongata_contig20175.5698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig20175:6324..6866+ (Himanthalia elongata Himel1 dioecious)back to top |