mRNA_H-elongata_contig201504.5683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201504.5683.1
Unique NamemRNA_H-elongata_contig201504.5683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: D8LQB1_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.490e-40
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1
Query:   76 DKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK 288
            DKS+IPDWARGK LAKILD+QYGGPNPLNPDKIF EFFTCNLEHIFNTKK KWDRSSSGNWHTDRLTIAEK
Sbjct:  549 DKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEK 619          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 6.580e-40
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1
Query:   76 DKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK 288
            DKS+IPDWARGK LAKILD+QYGGPNPLNPDKIF EFFTCNLEHIFNTKK KWDRSSSGNWHTDRLTIAEK
Sbjct:  964 DKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEK 1034          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: D7G3R5_ECTSI (INCENP_ARK-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R5_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.900e-24
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK 288
            +P+WA  + +A  L+RQYGG  P+NP+KIF +F+TC+LE IF+T K KWDR S+G+W +DRLTIAEK
Sbjct:   42 VPEWATNEGIAAALERQYGGDKPINPNKIFVDFYTCSLETIFDTNKKKWDRKSTGDWMSDRLTIAEK 108          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A835ZCU2_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.740e-20
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKW-DRSSSGNWHTDRLTIAEK 288
            IP WARGK L   L+RQ+GG  P+NPD IF+EFFTC+L+HIF+T+K ++  RSSSGNW  D+LT+ E+
Sbjct:  460 IPAWARGKQLEAALERQFGGSAPINPDTIFAEFFTCDLQHIFDTRKKRYVTRSSSGNWLQDKLTLPER 527          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A7S2M2L9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.960e-18
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   79 KSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAEK 288
            K  +P+WA+   L + L+RQ+  GPN L+PDKIF E  TCNLE IF+ KKS++ R +SSGNW  D +TIAEK
Sbjct:  227 KKKVPEWAQRHNLHRALERQFADGPNRLDPDKIFGEVLTCNLEEIFDKKKSRYQRRTSSGNWTKDHVTIAEK 298          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: K0SBK4_THAOC (SAP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBK4_THAOC)

HSP 1 Score: 78.6 bits (192), Expect = 6.130e-15
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   79 KSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAEK 288
            K ++P WA+   L + L++QY  GPN L+PDKIF E  +CNL+ IF+ KK+++ R +SSGNW  D +T  EK
Sbjct:  621 KKTVPQWAQKSNLMRALEKQYADGPNRLDPDKIFGEVLSCNLDEIFDKKKARYQRRTSSGNWSQDHVTAKEK 692          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A1E7FGC0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.150e-12
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   79 KSSIPDWARGKTLAKILDRQYGG---PNPLNPDKIFSEFFTCNLEHIFNTKKSKWDRS--SSGNWHTDRLTIAEK 288
            K  IP WA    L   L++QY G      ++PD+IF E  +C+LE IF TKK+K  RS  SSGNW  D++T+AEK
Sbjct:   30 KKKIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEK 104          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-12
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAE 285
            IP WA+G  L++ L RQY     ++PDKIF E FTC+LE IF   KS++ R  SS NW  DR+T  E
Sbjct:  195 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQE 261          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: A0A6H5KX29_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX29_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.390e-12
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   88 IPDWARGKTLAKILDRQYGGPNPLNPDKIFSEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAE 285
            IP WA+G  L++ L RQY     ++PDKIF E FTC+LE IF   KS++ R  SS NW  DR+T  E
Sbjct: 1441 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVTKSRYHRRGSSANWTPDRVTPQE 1507          
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Match: B8LC10_THAPS (Incenp-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC10_THAPS)

HSP 1 Score: 67.4 bits (163), Expect = 2.260e-11
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   79 KSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFSEFFTCNLEHIFN-TKKSKW-DRSSSGNW 258
            K ++P WA+   L   L++Q+  GPN L+PDKIF E  TCNLE IF+ +KKS++ +R+SSGNW
Sbjct:  193 KKAVPTWAQRSNLHAALEKQFADGPNRLDPDKIFGEVLTCNLEDIFDKSKKSRYKNRTSSGNW 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201504.5683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LQB1_ECTSI2.490e-4092.96INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A6H5L3Q6_9PHAE6.580e-4092.96SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3R5_ECTSI1.900e-2459.70INCENP_ARK-bind domain-containing protein n=2 Tax=... [more]
A0A835ZCU2_9STRA1.740e-2060.29SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2M2L9_9STRA9.960e-1855.56Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0SBK4_THAOC6.130e-1548.61SAP domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A1E7FGC0_9STRA1.150e-1248.00INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
D8LJ56_ECTSI1.450e-1250.75INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A6H5KX29_9PHAE4.390e-1250.75SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
B8LC10_THAPS2.260e-1152.38Incenp-like protein (Fragment) n=1 Tax=Thalassiosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201504contigH-elongata_contig201504:1..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue3.7e-34
Seed eggNOG ortholog2880.D8LQB1
EggNOG free text desc.Inner centromere protein, ARK binding region
EggNOG OGs29Q2T@1,2RX7J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size288
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201504.5683.1prot_H-elongata_contig201504.5683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201504 1..867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.3485432-CDS-H-elongata_contig201504:0..401622930133.3485432-CDS-H-elongata_contig201504:0..40Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201504 1..40 -
1691679293.5492485-CDS-H-elongata_contig201504:0..401691679293.5492485-CDS-H-elongata_contig201504:0..40Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201504 1..40 -
1622930133.3671532-CDS-H-elongata_contig201504:240..4081622930133.3671532-CDS-H-elongata_contig201504:240..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201504 241..408 -
1691679293.560204-CDS-H-elongata_contig201504:240..4081691679293.560204-CDS-H-elongata_contig201504:240..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201504 241..408 -
1622930133.3853712-CDS-H-elongata_contig201504:787..8671622930133.3853712-CDS-H-elongata_contig201504:787..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201504 788..867 -
1691679293.5688722-CDS-H-elongata_contig201504:787..8671691679293.5688722-CDS-H-elongata_contig201504:787..867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201504 788..867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201504.5683.1

>prot_H-elongata_contig201504.5683.1 ID=prot_H-elongata_contig201504.5683.1|Name=mRNA_H-elongata_contig201504.5683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
PESGSESGEDGEEAAQEIAEPQEPNDKSSIPDWARGKTLAKILDRQYGGP
NPLNPDKIFSEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEK
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mRNA from alignment at H-elongata_contig201504:1..867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201504.5683.1 ID=mRNA_H-elongata_contig201504.5683.1|Name=mRNA_H-elongata_contig201504.5683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig201504:1..867- (Himanthalia elongata Himel1 dioecious)
CCTGAGTCGGGATCGGAATCTGGTGAAGACGGAGAGGAGGCGGCTCAAGA GATCGCAGAGCCTCAAGAACCTAATGACAAGTGAGCGGCCTCTTGTTCTG GGATAAGTGTGTATCAAGTGCCCTCAACCTTTTTGTTGTAGATGTTGTCT CGAGCATGATGCGCCATATCTTTTTGGCGGCAAGTTCGATCAGCGATTAC GGGGGGGCGCGGCAGGTGCGAGTAGTGAGTAGTGAGTAGCGAACAAGCAT TAATTAAGGTAATAACAAATCTATAGACACAACGGTTACTTCCACCGTTA GTTTATAGTGTACTGGTCGGTTTCATTATTCTCCGTTGATAAAAACATGT CTGACATGTCAAAATAGCCATAACGTGTGGATACCAACATGCCTGACGTC TGTTGGGGTTGGGGGCGTGGGGAATATTTTACGTTATATCGTTTTTTTTC TGCCGAAAGGTCTTCGATCCCTGACTGGGCACGCGGCAAGACGCTGGCGA AGATTCTCGACAGGCAGTACGGTGGGCCGAACCCGCTTAACCCGGACAAG ATTTTCTCCGAGTTCTTCACCTGCAACCTGGAACATATCTTCAACACCAA GAAATCCAAGTGGGACCGCAGCAGCAGGTGGGGGTTCACGCGAAGTTATC GTGACATGATTACCATGGCTTGAGGCAAGAGGATAGAGACGTCGTCATAG TAATGACGTCACAGAATTGCTTTCGTGCCCTTTGATTGCCCTTTTGTTTT TATCGTGTTATCTGCGTTGAAAACTAACGTGTTTACTCCCCTCTCTCTCC GTGGCCTGCCTTGTTTCTCCTCTCCAGCGGCAACTGGCACACGGACCGTC TTACGATCGCGGAGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig201504:1..867-

>mRNA_H-elongata_contig201504.5683.1 ID=mRNA_H-elongata_contig201504.5683.1|Name=mRNA_H-elongata_contig201504.5683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig201504:1..867- (Himanthalia elongata Himel1 dioecious)
CCTGAGTCGGGATCGGAATCTGGTGAAGACGGAGAGGAGGCGGCTCAAGA
GATCGCAGAGCCTCAAGAACCTAATGACAACCTGAGTCGGGATCGGAATC
TGGTGAAGACGGAGAGGAGGCGGCTCAAGAGATCGCAGAGCCTCAAGAAC
CTAATGACAAGTCTTCGATCCCTGACTGGGCACGCGGCAAGACGCTGGCG
AAGATTCTCGACAGGCAGTACGGTGGGCCGAACCCGCTTAACCCGGACAA
GATTTTCTCCGAGTTCTTCACCTGCAACCTGGAACATATCTTCAACACCA
AGAAATCCAAGTGGGACCGCAGCAGCAGGTCTTCGATCCCTGACTGGGCA
CGCGGCAAGACGCTGGCGAAGATTCTCGACAGGCAGTACGGTGGGCCGAA
CCCGCTTAACCCGGACAAGATTTTCTCCGAGTTCTTCACCTGCAACCTGG
AACATATCTTCAACACCAAGAAATCCAAGTGGGACCGCAGCAGCAGCGGC
AACTGGCACACGGACCGTCTTACGATCGCGGAGAAACGGCAACTGGCACA
CGGACCGTCTTACGATCGCGGAGAAA
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