mRNA_H-elongata_contig198275.5551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198275.5551.1
Unique NamemRNA_H-elongata_contig198275.5551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A8F0F7A3_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.840e-24
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   19 KYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
            KY F+++W    IG+A++K   K   IP T+F+FWP E  WE+LK +L NKPW++ +DRIEILN +  IINYWL NV
Sbjct:   11 KYTFKIIWGRSYIGLAVDKRLNKDIMIPLTTFFFWPRENGWELLKMELSNKPWITKEDRIEILNGYTLIINYWLSNV 87          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A2I4Q2M4_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.440e-23
Identity = 36/84 (42.86%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 MKKLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVT 252
            M+  +  Y+F+ +W   +IG+A+ K   +    P T+++FWP+E  W++LKN+LYNKPW++ ++R+E+LN ++ II YWL+NVT
Sbjct:    1 MQPPKKTYLFKAIWGKNSIGLAVEKRLRENITSPVTTYFFWPSENGWKLLKNELYNKPWVTDEERVELLNGYNKIIKYWLKNVT 84          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: D1GJM8_FUCVE (Conserved hypothetical plastid protein n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJM8_FUCVE)

HSP 1 Score: 91.7 bits (226), Expect = 5.780e-22
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   22 YVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
            YVF+++WS   +G+A++K       +P T+F+FWP E  W++LK +L  KPW+S +D I+ILNS++ IINYWL NV
Sbjct:    8 YVFKIIWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNSYNEIINYWLRNV 83          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: B7T1T5_VAULI (Probable 30S ribosomal protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1T5_VAULI)

HSP 1 Score: 91.7 bits (226), Expect = 6.100e-22
Identity = 35/81 (43.21%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    7 KLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
            +++ KY+F+++WS  +IGIA+N+    Y +IP T+FYFWP E+ W++LK +L +KPW+    +  ILN +  +I+YW++NV
Sbjct:    2 EIKQKYLFKIIWSRTSIGIAVNQIYDNYYDIPLTTFYFWPKEDGWQLLKLELDSKPWILESSKNIILNGYALLIDYWIKNV 82          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A0Y0KCK9_9PHAE (Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KCK9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.630e-22
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   19 KYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
            +Y+F+++WS   +G+A++K       +P T+F+FWP E  W++LK +L  KPW+S +D I+ILN ++ IINYW+ENV
Sbjct:   12 RYIFKIIWSKNYLGLAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYNEIINYWIENV 88          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A1L2F1K2_9PHAE (Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.890e-21
Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    7 KLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVT 252
            K Q KY+F+++WS   + +A++K       +P T+F+FWP E  W++LK +L  KPW+S +D I+ILN +  IINYW++NV+
Sbjct:    8 KKQYKYIFKIIWSKNYLALAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYSEIINYWVKNVS 89          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: D1J701_ECTSI (Probable plastid-specific 30S ribosomal protein n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J701_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.220e-21
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   22 YVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
            YVF++LWS   +G+A++K     + +P T+F+FWP E  W++LK +L  KPW+S  D I+ILN++  IINYWL NV
Sbjct:    7 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNV 82          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A4D6WNF8_9FLOR (Probable 30S ribosomal protein PSRP-3 n=1 Tax=Anotrichium furcellatum TaxID=41999 RepID=A0A4D6WNF8_9FLOR)

HSP 1 Score: 88.6 bits (218), Expect = 7.800e-21
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   16 PKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVTLHSMVNSNNSYVYVKFIG 306
            PK+ F +LW D N+ IAI+    K  + P T ++FWP  +AWE LKN+L  KPW+S K++I +LN    IIN+W EN    S++ +   + Y  F G
Sbjct:    3 PKFTFRILWLDNNVAIAIDHIVKKNLS-PLTCYFFWPRNDAWEQLKNELDAKPWISEKEKIALLNQTTEIINFWQENDKKKSLIQAQERFPYFIFSG 98          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A0R6M0Q9_UNDPI (Putative plastid-specific 30S ribosomal protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M0Q9_UNDPI)

HSP 1 Score: 87.8 bits (216), Expect = 1.850e-20
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   22 YVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
            YVF+++WS   +G+A++K       +P T+F+FWP E  W++LK +L  KPW+S  D I+ILN++  IINYWL NV
Sbjct:    7 YVFKIIWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNAYTEIINYWLVNV 82          
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A4D6WSD0_9FLOR (Probable 30S ribosomal protein PSRP-3 n=1 Tax=Gayliella sp. TaxID=2575623 RepID=A0A4D6WSD0_9FLOR)

HSP 1 Score: 87.0 bits (214), Expect = 3.070e-20
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   19 KYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVTLHSMVNSNNSYVYVKFIG 306
            K+ F++LW D NI IAI+    K  + P TS++FWP  +AWE LK +L +KPW+S KDRIE+LN    IIN+W E     S+V +   +    F G
Sbjct:    3 KFTFKILWLDNNIAIAIDHVVGKTPS-PLTSYFFWPRNDAWEQLKTELDSKPWISDKDRIELLNQATTIINFWQERGQNKSLVQAQQEFPDFNFAG 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7A3_9PHAE4.840e-2453.25Uncharacterized protein n=1 Tax=Protohalopteris sp... [more]
A0A2I4Q2M4_9PHAE5.440e-2342.86Putative plastid-specific 30S ribosomal protein n=... [more]
D1GJM8_FUCVE5.780e-2248.68Conserved hypothetical plastid protein n=3 Tax=Fuc... [more]
B7T1T5_VAULI6.100e-2243.21Probable 30S ribosomal protein n=1 Tax=Vaucheria l... [more]
A0A0Y0KCK9_9PHAE6.630e-2245.45Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KC... [more]
A0A1L2F1K2_9PHAE1.890e-2143.90Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
D1J701_ECTSI3.220e-2148.68Probable plastid-specific 30S ribosomal protein n=... [more]
A0A4D6WNF8_9FLOR7.800e-2142.27Probable 30S ribosomal protein PSRP-3 n=1 Tax=Anot... [more]
A0A0R6M0Q9_UNDPI1.850e-2047.37Putative plastid-specific 30S ribosomal protein n=... [more]
A0A4D6WSD0_9FLOR3.070e-2044.79Probable 30S ribosomal protein PSRP-3 n=1 Tax=Gayl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198275contigH-elongata_contig198275:815..1120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue4.9e-16
Seed eggNOG ortholog2880.D1J701
Preferred nameycf65
KEGG koko:K19032
EggNOG free text desc.Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
EggNOG OGs2C5W0@1,2SDQ9@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.8693464-CDS-H-elongata_contig198275:814..11201622930119.8693464-CDS-H-elongata_contig198275:814..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198275 815..1120 +
1691679288.3450665-CDS-H-elongata_contig198275:814..11201691679288.3450665-CDS-H-elongata_contig198275:814..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198275 815..1120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198275.5551.1prot_H-elongata_contig198275.5551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198275 815..1120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198275.5551.1

>prot_H-elongata_contig198275.5551.1 ID=prot_H-elongata_contig198275.5551.1|Name=mRNA_H-elongata_contig198275.5551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MKKLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEIL
KNDLYNKPWLSIKDRIEILNSFHYIINYWLENVTLHSMVNSNNSYVYVKF
IG
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mRNA from alignment at H-elongata_contig198275:815..1120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198275.5551.1 ID=mRNA_H-elongata_contig198275.5551.1|Name=mRNA_H-elongata_contig198275.5551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig198275:815..1120+ (Himanthalia elongata Himel1 dioecious)
ATGAAAAAATTACAACCCAAATATGTTTTTGAAGTACTTTGGTCAGATAT TAATATTGGCATTGCTATAAATAAATTCCAAACAAAATATGCTAATATAC CAAGAACTAGTTTCTATTTTTGGCCAAATGAAGAGGCGTGGGAAATACTT AAAAATGACTTATACAACAAACCTTGGTTATCTATCAAAGACCGTATTGA AATTTTAAATAGTTTTCATTATATAATAAATTATTGGTTAGAAAATGTTA CATTACATTCTATGGTTAATTCTAATAATTCTTATGTATACGTAAAATTT ATTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig198275:815..1120+

>mRNA_H-elongata_contig198275.5551.1 ID=mRNA_H-elongata_contig198275.5551.1|Name=mRNA_H-elongata_contig198275.5551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig198275:815..1120+ (Himanthalia elongata Himel1 dioecious)
ATGAAAAAATTACAACCCAAATATGTTTTTGAAGTACTTTGGTCAGATAT
TAATATTGGCATTGCTATAAATAAATTCCAAACAAAATATGCTAATATAC
CAAGAACTAGTTTCTATTTTTGGCCAAATGAAGAGGCGTGGGAAATACTT
AAAAATGACTTATACAACAAACCTTGGTTATCTATCAAAGACCGTATTGA
AATTTTAAATAGTTTTCATTATATAATAAATTATTGGTTAGAAAATGTTA
CATTACATTCTATGGTTAATTCTAATAATTCTTATGTATACGTAAAATTT
ATTGGTATGAAAAAATTACAACCCAAATATGTTTTTGAAGTACTTTGGTC
AGATATTAATATTGGCATTGCTATAAATAAATTCCAAACAAAATATGCTA
ATATACCAAGAACTAGTTTCTATTTTTGGCCAAATGAAGAGGCGTGGGAA
ATACTTAAAAATGACTTATACAACAAACCTTGGTTATCTATCAAAGACCG
TATTGAAATTTTAAATAGTTTTCATTATATAATAAATTATTGGTTAGAAA
ATGTTACATTACATTCTATGGTTAATTCTAATAATTCTTATGTATACGTA
AAATTTATTGGT
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