mRNA_H-elongata_contig198275.5551.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A8F0F7A3_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A3_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.840e-24 Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 19 KYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
KY F+++W IG+A++K K IP T+F+FWP E WE+LK +L NKPW++ +DRIEILN + IINYWL NV
Sbjct: 11 KYTFKIIWGRSYIGLAVDKRLNKDIMIPLTTFFFWPRENGWELLKMELSNKPWITKEDRIEILNGYTLIINYWLSNV 87
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A2I4Q2M4_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M4_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.440e-23 Identity = 36/84 (42.86%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 1 MKKLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVT 252
M+ + Y+F+ +W +IG+A+ K + P T+++FWP+E W++LKN+LYNKPW++ ++R+E+LN ++ II YWL+NVT
Sbjct: 1 MQPPKKTYLFKAIWGKNSIGLAVEKRLRENITSPVTTYFFWPSENGWKLLKNELYNKPWVTDEERVELLNGYNKIIKYWLKNVT 84
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: D1GJM8_FUCVE (Conserved hypothetical plastid protein n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJM8_FUCVE) HSP 1 Score: 91.7 bits (226), Expect = 5.780e-22 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 22 YVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
YVF+++WS +G+A++K +P T+F+FWP E W++LK +L KPW+S +D I+ILNS++ IINYWL NV
Sbjct: 8 YVFKIIWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNSYNEIINYWLRNV 83
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: B7T1T5_VAULI (Probable 30S ribosomal protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1T5_VAULI) HSP 1 Score: 91.7 bits (226), Expect = 6.100e-22 Identity = 35/81 (43.21%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 7 KLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
+++ KY+F+++WS +IGIA+N+ Y +IP T+FYFWP E+ W++LK +L +KPW+ + ILN + +I+YW++NV
Sbjct: 2 EIKQKYLFKIIWSRTSIGIAVNQIYDNYYDIPLTTFYFWPKEDGWQLLKLELDSKPWILESSKNIILNGYALLIDYWIKNV 82
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A0Y0KCK9_9PHAE (Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KCK9_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 6.630e-22 Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 19 KYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
+Y+F+++WS +G+A++K +P T+F+FWP E W++LK +L KPW+S +D I+ILN ++ IINYW+ENV
Sbjct: 12 RYIFKIIWSKNYLGLAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYNEIINYWIENV 88
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A1L2F1K2_9PHAE (Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.890e-21 Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 7 KLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVT 252
K Q KY+F+++WS + +A++K +P T+F+FWP E W++LK +L KPW+S +D I+ILN + IINYW++NV+
Sbjct: 8 KKQYKYIFKIIWSKNYLALAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYSEIINYWVKNVS 89
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: D1J701_ECTSI (Probable plastid-specific 30S ribosomal protein n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J701_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 3.220e-21 Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 22 YVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
YVF++LWS +G+A++K + +P T+F+FWP E W++LK +L KPW+S D I+ILN++ IINYWL NV
Sbjct: 7 YVFKILWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNV 82
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A4D6WNF8_9FLOR (Probable 30S ribosomal protein PSRP-3 n=1 Tax=Anotrichium furcellatum TaxID=41999 RepID=A0A4D6WNF8_9FLOR) HSP 1 Score: 88.6 bits (218), Expect = 7.800e-21 Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 16 PKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVTLHSMVNSNNSYVYVKFIG 306
PK+ F +LW D N+ IAI+ K + P T ++FWP +AWE LKN+L KPW+S K++I +LN IIN+W EN S++ + + Y F G
Sbjct: 3 PKFTFRILWLDNNVAIAIDHIVKKNLS-PLTCYFFWPRNDAWEQLKNELDAKPWISEKEKIALLNQTTEIINFWQENDKKKSLIQAQERFPYFIFSG 98
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A0R6M0Q9_UNDPI (Putative plastid-specific 30S ribosomal protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M0Q9_UNDPI) HSP 1 Score: 87.8 bits (216), Expect = 1.850e-20 Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 22 YVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENV 249
YVF+++WS +G+A++K +P T+F+FWP E W++LK +L KPW+S D I+ILN++ IINYWL NV
Sbjct: 7 YVFKIIWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNAYTEIINYWLVNV 82
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Match: A0A4D6WSD0_9FLOR (Probable 30S ribosomal protein PSRP-3 n=1 Tax=Gayliella sp. TaxID=2575623 RepID=A0A4D6WSD0_9FLOR) HSP 1 Score: 87.0 bits (214), Expect = 3.070e-20 Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 19 KYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILKNDLYNKPWLSIKDRIEILNSFHYIINYWLENVTLHSMVNSNNSYVYVKFIG 306
K+ F++LW D NI IAI+ K + P TS++FWP +AWE LK +L +KPW+S KDRIE+LN IIN+W E S+V + + F G
Sbjct: 3 KFTFKILWLDNNIAIAIDHVVGKTPS-PLTSYFFWPRNDAWEQLKTELDSKPWISDKDRIELLNQATTIINFWQERGQNKSLVQAQQEFPDFNFAG 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198275.5551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198275.5551.1 >prot_H-elongata_contig198275.5551.1 ID=prot_H-elongata_contig198275.5551.1|Name=mRNA_H-elongata_contig198275.5551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MKKLQPKYVFEVLWSDINIGIAINKFQTKYANIPRTSFYFWPNEEAWEILback to top mRNA from alignment at H-elongata_contig198275:815..1120+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198275.5551.1 ID=mRNA_H-elongata_contig198275.5551.1|Name=mRNA_H-elongata_contig198275.5551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig198275:815..1120+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198275:815..1120+ >mRNA_H-elongata_contig198275.5551.1 ID=mRNA_H-elongata_contig198275.5551.1|Name=mRNA_H-elongata_contig198275.5551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig198275:815..1120+ (Himanthalia elongata Himel1 dioecious)back to top |