mRNA_H-elongata_contig198275.5549.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198275.5549.1
Unique NamemRNA_H-elongata_contig198275.5549.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8E5XRH1_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.430e-23
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   10 TTLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
            T  Y++KSYYWI+  R+ + WFPN+NPY+ P+Y L  +T P++E+FEG  P +LG+D S ++AFI LEW I T+ SI F
Sbjct:   27 TIKYLVKSYYWILTLRLSMQWFPNINPYVHPMYALLYLTDPFLENFEGLVPNVLGMDMSSMLAFICLEWIIRTLDSIAF 105          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8F0FC81_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC81_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.410e-21
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
            L+ YYW++  R+ + WFPN+NPYI P+Y+L   T  ++ESFEG  P +LG+D S + AFIFLEW I T  +I+F
Sbjct:   21 LRVYYWVLTLRLSVQWFPNINPYIHPVYVLLHATDFFLESFEGIVPNILGMDMSAMCAFIFLEWVIRTCQAIKF 94          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A1I9LVX8_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.950e-19
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
            T+  LKSYYW ++ R ++ WFPNVNPYI P++ L  +T  +++ F+G  P +LG+D S ++AF+ LEW I T+ SI
Sbjct:   42 TVLFLKSYYWALSVRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPNILGMDMSAMLAFVCLEWMIRTLESI 117          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.800e-18
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
            T+  LK YYW ++ R V+ WFPN+NPYI PL+ L A+T  +++ FE   P +LG+D S ++AF+ LEW I T+ SI
Sbjct:   42 TVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 117          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A2I4Q2N4_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2N4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.610e-18
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   28 KSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRFI 249
            + YYWI+  R+ L WFP++NPYI PLY+L   T  Y+E F G  P +LGID + + AF+ LEW I T+ +I F+
Sbjct:   47 RLYYWILTIRVTLQWFPSINPYIFPLYMLIHATDFYLEQFTGLVPTILGIDMTTMCAFVCLEWIIRTLDAISFV 120          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.370e-18
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
            T+  LK YYW ++ R V+ WFPNVNPYI P++ L  +T  +++ F+G  P + G+D S ++AFI LEW I T+ SI
Sbjct:   37 TVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESI 112          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A0S0GAB4_COSCS (Uncharacterized protein n=25 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAB4_COSCS)

HSP 1 Score: 80.9 bits (198), Expect = 7.070e-18
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
            L+ YYWI+  R+ + WFPN+NPYI P+Y L   T  +++ F+   P +LG+D S + AFIFLEW I T+ SI F
Sbjct:   40 LRQYYWILTLRLSIQWFPNINPYIHPMYSLLHATDFFLKEFDDIVPTVLGMDMSSMCAFIFLEWIIRTLESITF 113          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.460e-17
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRFI 249
            L+ YYWI+  R+ + WFPN+NPYI P+Y L   T  +++ FE   P +LG+D S + AFI LEW I T+ SI F+
Sbjct:   44 LRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESITFV 118          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8F0JZ04_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ04_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.930e-17
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
            L+ YYWI+  R+ + WFPN+NPYI P+Y L   T  +++ F+   P +LG+D S + AFIFLEW I T+ SI F
Sbjct:   52 LRQYYWILTLRLSVQWFPNINPYIHPMYSLIHATDFFLKEFDHIVPTVLGMDMSSMCAFIFLEWMIRTLESITF 125          
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO)

HSP 1 Score: 79.7 bits (195), Expect = 2.120e-17
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
            T+  LK YYW ++ R ++ WFPNVNPYI P++ L  +T  +++ F+G  P + G+D S ++AFI LEW I T+ SI
Sbjct:   43 TVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESI 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A8E5XRH1_9PHAE2.430e-2351.90Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A8F0FC81_9PHAE3.410e-2151.35Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A1I9LVX8_9PHAE8.950e-1947.37Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
D1J703_ECTSI1.800e-1848.68Uncharacterized protein ycf19 n=2 Tax=Ectocarpus s... [more]
A0A2I4Q2N4_9PHAE3.610e-1848.65Uncharacterized protein n=1 Tax=Dictyopteris divar... [more]
A0A6B7EZ30_9PHAE6.370e-1847.37Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A0S0GAB4_COSCS7.070e-1848.65Uncharacterized protein n=25 Tax=Laminariales TaxI... [more]
A0A8F0F7Z7_9PHAE1.460e-1748.00Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A8F0JZ04_9PHAE1.930e-1748.65Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A7T8G5F0_SCYLO2.120e-1746.05Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198275contigH-elongata_contig198275:242..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.776116-CDS-H-elongata_contig198275:241..4931622930119.776116-CDS-H-elongata_contig198275:241..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198275 242..493 +
1691679288.3198135-CDS-H-elongata_contig198275:241..4931691679288.3198135-CDS-H-elongata_contig198275:241..493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198275 242..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198275.5549.1prot_H-elongata_contig198275.5549.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198275 242..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198275.5549.1

>prot_H-elongata_contig198275.5549.1 ID=prot_H-elongata_contig198275.5549.1|Name=mRNA_H-elongata_contig198275.5549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VLDTTLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFE
GAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRFI*
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mRNA from alignment at H-elongata_contig198275:242..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198275.5549.1 ID=mRNA_H-elongata_contig198275.5549.1|Name=mRNA_H-elongata_contig198275.5549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig198275:242..493+ (Himanthalia elongata Himel1 dioecious)
GTCCTTGATACGACATTATATATTTTAAAAAGTTACTATTGGATAATGAA TGCTAGAATGGTTTTATATTGGTTTCCAAACGTGAATCCATATATATCAC CTTTATACATTCTTACTGCAGTAACAACCCCTTATATTGAATCATTTGAA GGAGCATTCCCAAAATTATTAGGTATAGATACGTCGTTATTAGTTGCTTT CATATTCTTAGAGTGGGCAATTGTAACTGTTGGTTCAATTAGATTTATAT AA
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Coding sequence (CDS) from alignment at H-elongata_contig198275:242..493+

>mRNA_H-elongata_contig198275.5549.1 ID=mRNA_H-elongata_contig198275.5549.1|Name=mRNA_H-elongata_contig198275.5549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig198275:242..493+ (Himanthalia elongata Himel1 dioecious)
GTCCTTGATACGACATTATATATTTTAAAAAGTTACTATTGGATAATGAA
TGCTAGAATGGTTTTATATTGGTTTCCAAACGTGAATCCATATATATCAC
CTTTATACATTCTTACTGCAGTAACAACCCCTTATATTGAATCATTTGAA
GGAGCATTCCCAAAATTATTAGGTATAGATACGTCGTTATTAGTTGCTTT
CATATTCTTAGAGTGGGCAATTGTAACTGTTGGTTCAATTAGATTTATAT
AAGTCCTTGATACGACATTATATATTTTAAAAAGTTACTATTGGATAATG
AATGCTAGAATGGTTTTATATTGGTTTCCAAACGTGAATCCATATATATC
ACCTTTATACATTCTTACTGCAGTAACAACCCCTTATATTGAATCATTTG
AAGGAGCATTCCCAAAATTATTAGGTATAGATACGTCGTTATTAGTTGCT
TTCATATTCTTAGAGTGGGCAATTGTAACTGTTGGTTCAATTAGATTTAT
ATAA
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