mRNA_H-elongata_contig198275.5549.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8E5XRH1_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.430e-23 Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 10 TTLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
T Y++KSYYWI+ R+ + WFPN+NPY+ P+Y L +T P++E+FEG P +LG+D S ++AFI LEW I T+ SI F
Sbjct: 27 TIKYLVKSYYWILTLRLSMQWFPNINPYVHPMYALLYLTDPFLENFEGLVPNVLGMDMSSMLAFICLEWIIRTLDSIAF 105
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8F0FC81_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC81_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 3.410e-21 Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
L+ YYW++ R+ + WFPN+NPYI P+Y+L T ++ESFEG P +LG+D S + AFIFLEW I T +I+F
Sbjct: 21 LRVYYWVLTLRLSVQWFPNINPYIHPVYVLLHATDFFLESFEGIVPNILGMDMSAMCAFIFLEWVIRTCQAIKF 94
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A1I9LVX8_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 8.950e-19 Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
T+ LKSYYW ++ R ++ WFPNVNPYI P++ L +T +++ F+G P +LG+D S ++AF+ LEW I T+ SI
Sbjct: 42 TVLFLKSYYWALSVRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPNILGMDMSAMLAFVCLEWMIRTLESI 117
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: D1J703_ECTSI (Uncharacterized protein ycf19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J703_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 1.800e-18 Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
T+ LK YYW ++ R V+ WFPN+NPYI PL+ L A+T +++ FE P +LG+D S ++AF+ LEW I T+ SI
Sbjct: 42 TVMFLKGYYWALSIRFVVQWFPNINPYIHPLFGLIAITDIFLKEFEDLLPPILGMDLSAMMAFLCLEWMIRTLDSI 117
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A2I4Q2N4_9PHAE (Uncharacterized protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2N4_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 3.610e-18 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 28 KSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRFI 249
+ YYWI+ R+ L WFP++NPYI PLY+L T Y+E F G P +LGID + + AF+ LEW I T+ +I F+
Sbjct: 47 RLYYWILTIRVTLQWFPSINPYIFPLYMLIHATDFYLEQFTGLVPTILGIDMTTMCAFVCLEWIIRTLDAISFV 120
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A6B7EZ30_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ30_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 6.370e-18 Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
T+ LK YYW ++ R V+ WFPNVNPYI P++ L +T +++ F+G P + G+D S ++AFI LEW I T+ SI
Sbjct: 37 TVLFLKGYYWALSIRFVVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESI 112
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A0S0GAB4_COSCS (Uncharacterized protein n=25 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAB4_COSCS) HSP 1 Score: 80.9 bits (198), Expect = 7.070e-18 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
L+ YYWI+ R+ + WFPN+NPYI P+Y L T +++ F+ P +LG+D S + AFIFLEW I T+ SI F
Sbjct: 40 LRQYYWILTLRLSIQWFPNINPYIHPMYSLLHATDFFLKEFDDIVPTVLGMDMSSMCAFIFLEWIIRTLESITF 113
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8F0F7Z7_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z7_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.460e-17 Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRFI 249
L+ YYWI+ R+ + WFPN+NPYI P+Y L T +++ FE P +LG+D S + AFI LEW I T+ SI F+
Sbjct: 44 LRQYYWILTLRLSIQWFPNINPYIHPMYSLLYATDFFLKEFEEIIPAILGMDMSSMCAFICLEWMIRTLESITFV 118
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A8F0JZ04_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ04_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.930e-17 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 25 LKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSIRF 246
L+ YYWI+ R+ + WFPN+NPYI P+Y L T +++ F+ P +LG+D S + AFIFLEW I T+ SI F
Sbjct: 52 LRQYYWILTLRLSVQWFPNINPYIHPMYSLIHATDFFLKEFDHIVPTVLGMDMSSMCAFIFLEWMIRTLESITF 125
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Match: A0A7T8G5F0_SCYLO (Ycf19 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F0_SCYLO) HSP 1 Score: 79.7 bits (195), Expect = 2.120e-17 Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 13 TLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEGAFPKLLGIDTSLLVAFIFLEWAIVTVGSI 240
T+ LK YYW ++ R ++ WFPNVNPYI P++ L +T +++ F+G P + G+D S ++AFI LEW I T+ SI
Sbjct: 43 TVLFLKGYYWALSIRFLVQWFPNVNPYIHPMFGLIVITDIFLKEFQGLLPTIFGMDMSAMMAFICLEWMIRTLESI 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198275.5549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198275.5549.1 >prot_H-elongata_contig198275.5549.1 ID=prot_H-elongata_contig198275.5549.1|Name=mRNA_H-elongata_contig198275.5549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp VLDTTLYILKSYYWIMNARMVLYWFPNVNPYISPLYILTAVTTPYIESFEback to top mRNA from alignment at H-elongata_contig198275:242..493+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198275.5549.1 ID=mRNA_H-elongata_contig198275.5549.1|Name=mRNA_H-elongata_contig198275.5549.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig198275:242..493+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198275:242..493+ >mRNA_H-elongata_contig198275.5549.1 ID=mRNA_H-elongata_contig198275.5549.1|Name=mRNA_H-elongata_contig198275.5549.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig198275:242..493+ (Himanthalia elongata Himel1 dioecious)back to top |