mRNA_H-elongata_contig198155.5546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198155.5546.1
Unique NamemRNA_H-elongata_contig198155.5546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.060e-58
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            ++LGTDVSP+DALSVARFYEG+HELG AG+FYSLCGQHHRALKLFLQCGKQEV+AAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALG+YSQ  K
Sbjct:  482 KVLGTDVSPDDALSVARFYEGKHELGKAGKFYSLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAK 586          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.130e-58
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            ++LGTDVSP+DALSVARFYEG+HELG AG+FYSLCGQHHRALKLFLQCGKQEV+AAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALG+YSQ  K
Sbjct: 1103 KVLGTDVSPDDALSVARFYEGKHELGKAGKFYSLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAK 1207          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S2CHE3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHE3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.270e-48
Identity = 81/105 (77.14%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            ++LG  + PE+A SVA FYEGQHELG AG FYSLCGQ+ RALKLFLQCG++EVD AI VVGKARNDMLTHTLIDFLMGETDGVPK+P +IYRLY+ALGNY+Q  K
Sbjct:  205 KVLGDGIGPEEAQSVASFYEGQHELGQAGHFYSLCGQYARALKLFLQCGEKEVDRAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHIYRLYLALGNYAQAAK 309          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S2AWF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWF5_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.770e-44
Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    4 LLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHKQLL 324
            +LG  + P+DA +   +YE +H++G AG FY+LCGQH +ALKLFLQCG +EV+ AI VVGKARNDMLTHTLIDFLMGETDGVPK+P ++YRLY+ALGNY+Q  K  L
Sbjct:  127 VLGETMGPDDAANTGSYYEAKHDMGKAGHFYALCGQHAKALKLFLQCGDKEVERAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHVYRLYLALGNYAQAAKTAL 233          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN)

HSP 1 Score: 159 bits (403), Expect = 3.400e-43
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    4 LLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            +LG  ++P+DALSVA+ YE  HELG AG+FY+LCGQ+ RALKLF+QCG++EV  AI +VGKAR+D LTHTLIDFLMGE DGVPKDPNYIYRLY+ALGN+ Q  K
Sbjct: 1050 VLGDAIAPDDALSVAQHYEAVHELGLAGQFYALCGQYPRALKLFIQCGEKEVHRAIEIVGKARSDSLTHTLIDFLMGEPDGVPKDPNYIYRLYLALGNFPQAAK 1153          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.580e-42
Identity = 75/99 (75.76%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   19 VSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            + P DAL VAR+YE Q ELG AGR Y+ CGQHHRALKL LQ G+ EV AAI VVG+ARNDMLTHTLID+LMGETDGVPKDPN+IYRLY+ALGNY Q  K
Sbjct: 1160 LPPADALRVARYYEAQGELGAAGRHYAACGQHHRALKLLLQRGEAEVAAAIDVVGRARNDMLTHTLIDYLMGETDGVPKDPNHIYRLYLALGNYQQAAK 1258          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S1CDP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDP1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.410e-41
Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    7 LGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            LG   + E+ L +ARF+E + + G AG F+++CGQ+H+ALKLFLQCG+ E+D AI VVGKAR+DMLTHTLIDFLMGETDGVPKDPNYI+RLYMALGNY Q  K
Sbjct: 1046 LGKSGTDEEYLRIARFFESKSKWGRAGEFFAICGQYHKALKLFLQCGEAEMDRAIEVVGKARSDMLTHTLIDFLMGETDGVPKDPNYIFRLYMALGNYPQAGK 1148          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S2W386_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W386_9STRA)

HSP 1 Score: 152 bits (385), Expect = 9.070e-41
Identity = 70/101 (69.31%), Postives = 87/101 (86.14%), Query Frame = 1
Query:    4 LLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQ 306
            +L   + P++A +VA +YEGQH+LG AG FYSLCGQ+ RAL+LFLQCG+++VD AI VVGKA+NDMLTHTLIDFLMGE+DGVPK+P +I RLY+ALGNY Q
Sbjct:  978 ILDDGIGPDEANAVAVYYEGQHDLGKAGHFYSLCGQYARALRLFLQCGEKQVDRAIDVVGKAQNDMLTHTLIDFLMGESDGVPKEPVHINRLYLALGNYEQ 1078          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A1W0A7H3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7H3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.140e-40
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            Q++G ++S E AL +A FYE       AG FY +CG +H+AL+LFLQCG+ E+  AI VVGKARNDMLTHTLIDFLMG+TDG+PKDPNYI+RLYMALGNY+Q  K
Sbjct: 1027 QIIGENISGERALKIALFYEQTGAHARAGEFYQVCGNYHKALRLFLQCGESELGKAIDVVGKARNDMLTHTLIDFLMGDTDGIPKDPNYIFRLYMALGNYAQAAK 1131          
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A067CC00_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CC00_SAPPC)

HSP 1 Score: 149 bits (375), Expect = 2.020e-39
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
            Q++G  +S + AL +A+ YE       AG FY +CG +H+AL+LFLQCG+ E+  AI VVGKARNDMLTHTLIDFLMG+TDG+PKDPNYI+RLYMALGNY+Q  K
Sbjct: 1028 QIIGEAISADRALKIAQHYEQTQAYARAGEFYQVCGNYHKALRLFLQCGESELGNAIDVVGKARNDMLTHTLIDFLMGDTDGIPKDPNYIFRLYMALGNYAQAAK 1132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE11_9PHAE3.060e-5890.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIK0_ECTSI5.130e-5890.48WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
A0A7S2CHE3_9STRA1.270e-4877.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AWF5_9STRA3.770e-4466.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YFC0_AURAN3.400e-4371.15Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835ZAW6_9STRA5.580e-4275.76WD repeat membrane protein n=1 Tax=Tribonema minus... [more]
A0A7S1CDP1_9STRA1.410e-4168.93Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2W386_9STRA9.070e-4169.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1W0A7H3_9STRA3.140e-4065.71Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CC00_SAPPC2.020e-3963.81Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198155contigH-elongata_contig198155:5..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.1e-49
Seed eggNOG ortholog2880.D7FIK0
Preferred nameFAP66
KEGG koko:K19671
EggNOG free text desc.myotome development
EggNOG OGsKOG2247@1,KOG2247@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.5624063-CDS-H-elongata_contig198155:4..2301622930119.5624063-CDS-H-elongata_contig198155:4..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198155 5..230 -
1691679288.2654176-CDS-H-elongata_contig198155:4..2301691679288.2654176-CDS-H-elongata_contig198155:4..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198155 5..230 -
1622930119.573158-CDS-H-elongata_contig198155:555..6531622930119.573158-CDS-H-elongata_contig198155:555..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198155 556..653 -
1691679288.2789817-CDS-H-elongata_contig198155:555..6531691679288.2789817-CDS-H-elongata_contig198155:555..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198155 556..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198155.5546.1prot_H-elongata_contig198155.5546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198155 5..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198155.5546.1

>prot_H-elongata_contig198155.5546.1 ID=prot_H-elongata_contig198155.5546.1|Name=mRNA_H-elongata_contig198155.5546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGK
QEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNY
SQVHKQLL
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mRNA from alignment at H-elongata_contig198155:5..653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198155.5546.1 ID=mRNA_H-elongata_contig198155.5546.1|Name=mRNA_H-elongata_contig198155.5546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at H-elongata_contig198155:5..653- (Himanthalia elongata Himel1 dioecious)
CAGCTGCTCGGAACTGACGTATCTCCAGAAGACGCACTGAGCGTGGCAAG ATTCTACGAGGGGCAGCACGAGCTCGGGAACGCCGGCAGATTCTACAGGT GCGCACATAAACAAACAACCGTAAAAATAACTCGTTTCCACGAACACATC AGCTCGAACTTACGAATTACATGTTTTTCCGTGCGTGGGAGATTTGTCTA TCGTTGACTGGCCGTCGGAAGCCCGAGCATTCTCCACGTCTTGATGATCA ACATGCACTGTCAAGAAAGCCCATCGGCGAAGATAGAAAGGGGCTTGGGT CGTCAGGGTTTTTCACCAGTCCATCGTCTCCTTGTCCCCCTCTACCCCAC TCCGAGCGATAAGCGGTTCGTCACATTTCTCACCCTTACGGCGCACAAAC ATCGCGCGTTTGTTCGGTGCAAGCTTGTGTGGACAGCACCACCGTGCACT GAAACTGTTCCTGCAGTGTGGAAAGCAAGAGGTCGATGCGGCGATCGCGG TTGTGGGCAAGGCGCGCAACGACATGCTGACCCATACTTTAATCGACTTC CTCATGGGGGAGACGGACGGGGTGCCGAAGGACCCCAACTACATATACCG TCTTTACATGGCTCTGGGGAACTACTCGCAGGTCCATAAGCAGTTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig198155:5..653-

>mRNA_H-elongata_contig198155.5546.1 ID=mRNA_H-elongata_contig198155.5546.1|Name=mRNA_H-elongata_contig198155.5546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig198155:5..653- (Himanthalia elongata Himel1 dioecious)
CAGCTGCTCGGAACTGACGTATCTCCAGAAGACGCACTGAGCGTGGCAAG
ATTCTACGAGGGGCAGCACGAGCTCGGGAACGCCGGCAGATTCTACAGCA
GCTGCTCGGAACTGACGTATCTCCAGAAGACGCACTGAGCGTGGCAAGAT
TCTACGAGGGGCAGCACGAGCTCGGGAACGCCGGCAGATTCTACAGCTTG
TGTGGACAGCACCACCGTGCACTGAAACTGTTCCTGCAGTGTGGAAAGCA
AGAGGTCGATGCGGCGATCGCGGTTGTGGGCAAGGCGCGCAACGACATGC
TGACCCATACTTTAATCGACTTCCTCATGGGGGAGACGGACGGGGTGCCG
AAGGACCCCAACTACATATACCGTCTTTACATGGCTCTGGGGAACTACTC
GCAGGTCCATAAGCAGTTGCTGCTTGTGTGGACAGCACCACCGTGCACTG
AAACTGTTCCTGCAGTGTGGAAAGCAAGAGGTCGATGCGGCGATCGCGGT
TGTGGGCAAGGCGCGCAACGACATGCTGACCCATACTTTAATCGACTTCC
TCATGGGGGAGACGGACGGGGTGCCGAAGGACCCCAACTACATATACCGT
CTTTACATGGCTCTGGGGAACTACTCGCAGGTCCATAAGCAGTTGCTG
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