mRNA_H-elongata_contig198155.5546.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE) HSP 1 Score: 202 bits (513), Expect = 3.060e-58 Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
++LGTDVSP+DALSVARFYEG+HELG AG+FYSLCGQHHRALKLFLQCGKQEV+AAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALG+YSQ K
Sbjct: 482 KVLGTDVSPDDALSVARFYEGKHELGKAGKFYSLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAK 586
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI) HSP 1 Score: 202 bits (513), Expect = 5.130e-58 Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
++LGTDVSP+DALSVARFYEG+HELG AG+FYSLCGQHHRALKLFLQCGKQEV+AAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALG+YSQ K
Sbjct: 1103 KVLGTDVSPDDALSVARFYEGKHELGKAGKFYSLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAK 1207
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S2CHE3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHE3_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.270e-48 Identity = 81/105 (77.14%), Postives = 92/105 (87.62%), Query Frame = 1
Query: 1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
++LG + PE+A SVA FYEGQHELG AG FYSLCGQ+ RALKLFLQCG++EVD AI VVGKARNDMLTHTLIDFLMGETDGVPK+P +IYRLY+ALGNY+Q K
Sbjct: 205 KVLGDGIGPEEAQSVASFYEGQHELGQAGHFYSLCGQYARALKLFLQCGEKEVDRAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHIYRLYLALGNYAQAAK 309
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S2AWF5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWF5_9STRA) HSP 1 Score: 158 bits (400), Expect = 3.770e-44 Identity = 71/107 (66.36%), Postives = 88/107 (82.24%), Query Frame = 1
Query: 4 LLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHKQLL 324
+LG + P+DA + +YE +H++G AG FY+LCGQH +ALKLFLQCG +EV+ AI VVGKARNDMLTHTLIDFLMGETDGVPK+P ++YRLY+ALGNY+Q K L
Sbjct: 127 VLGETMGPDDAANTGSYYEAKHDMGKAGHFYALCGQHAKALKLFLQCGDKEVERAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHVYRLYLALGNYAQAAKTAL 233
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN) HSP 1 Score: 159 bits (403), Expect = 3.400e-43 Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1
Query: 4 LLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
+LG ++P+DALSVA+ YE HELG AG+FY+LCGQ+ RALKLF+QCG++EV AI +VGKAR+D LTHTLIDFLMGE DGVPKDPNYIYRLY+ALGN+ Q K
Sbjct: 1050 VLGDAIAPDDALSVAQHYEAVHELGLAGQFYALCGQYPRALKLFIQCGEKEVHRAIEIVGKARSDSLTHTLIDFLMGEPDGVPKDPNYIYRLYLALGNFPQAAK 1153
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA) HSP 1 Score: 156 bits (394), Expect = 5.580e-42 Identity = 75/99 (75.76%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 19 VSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
+ P DAL VAR+YE Q ELG AGR Y+ CGQHHRALKL LQ G+ EV AAI VVG+ARNDMLTHTLID+LMGETDGVPKDPN+IYRLY+ALGNY Q K
Sbjct: 1160 LPPADALRVARYYEAQGELGAAGRHYAACGQHHRALKLLLQRGEAEVAAAIDVVGRARNDMLTHTLIDYLMGETDGVPKDPNHIYRLYLALGNYQQAAK 1258
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S1CDP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDP1_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.410e-41 Identity = 71/103 (68.93%), Postives = 86/103 (83.50%), Query Frame = 1
Query: 7 LGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
LG + E+ L +ARF+E + + G AG F+++CGQ+H+ALKLFLQCG+ E+D AI VVGKAR+DMLTHTLIDFLMGETDGVPKDPNYI+RLYMALGNY Q K
Sbjct: 1046 LGKSGTDEEYLRIARFFESKSKWGRAGEFFAICGQYHKALKLFLQCGEAEMDRAIEVVGKARSDMLTHTLIDFLMGETDGVPKDPNYIFRLYMALGNYPQAGK 1148
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A7S2W386_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W386_9STRA) HSP 1 Score: 152 bits (385), Expect = 9.070e-41 Identity = 70/101 (69.31%), Postives = 87/101 (86.14%), Query Frame = 1
Query: 4 LLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQ 306
+L + P++A +VA +YEGQH+LG AG FYSLCGQ+ RAL+LFLQCG+++VD AI VVGKA+NDMLTHTLIDFLMGE+DGVPK+P +I RLY+ALGNY Q
Sbjct: 978 ILDDGIGPDEANAVAVYYEGQHDLGKAGHFYSLCGQYARALRLFLQCGEKQVDRAIDVVGKAQNDMLTHTLIDFLMGESDGVPKEPVHINRLYLALGNYEQ 1078
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A1W0A7H3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7H3_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.140e-40 Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1
Query: 1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
Q++G ++S E AL +A FYE AG FY +CG +H+AL+LFLQCG+ E+ AI VVGKARNDMLTHTLIDFLMG+TDG+PKDPNYI+RLYMALGNY+Q K
Sbjct: 1027 QIIGENISGERALKIALFYEQTGAHARAGEFYQVCGNYHKALRLFLQCGESELGKAIDVVGKARNDMLTHTLIDFLMGDTDGIPKDPNYIFRLYMALGNYAQAAK 1131
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Match: A0A067CC00_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CC00_SAPPC) HSP 1 Score: 149 bits (375), Expect = 2.020e-39 Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 1
Query: 1 QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKQEVDAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGNYSQVHK 315
Q++G +S + AL +A+ YE AG FY +CG +H+AL+LFLQCG+ E+ AI VVGKARNDMLTHTLIDFLMG+TDG+PKDPNYI+RLYMALGNY+Q K
Sbjct: 1028 QIIGEAISADRALKIAQHYEQTQAYARAGEFYQVCGNYHKALRLFLQCGESELGNAIDVVGKARNDMLTHTLIDFLMGDTDGIPKDPNYIFRLYMALGNYAQAAK 1132 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198155.5546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198155.5546.1 >prot_H-elongata_contig198155.5546.1 ID=prot_H-elongata_contig198155.5546.1|Name=mRNA_H-elongata_contig198155.5546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp QLLGTDVSPEDALSVARFYEGQHELGNAGRFYSLCGQHHRALKLFLQCGKback to top mRNA from alignment at H-elongata_contig198155:5..653- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198155.5546.1 ID=mRNA_H-elongata_contig198155.5546.1|Name=mRNA_H-elongata_contig198155.5546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at H-elongata_contig198155:5..653- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198155:5..653- >mRNA_H-elongata_contig198155.5546.1 ID=mRNA_H-elongata_contig198155.5546.1|Name=mRNA_H-elongata_contig198155.5546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig198155:5..653- (Himanthalia elongata Himel1 dioecious)back to top |