mRNA_H-elongata_contig197713.5525.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197713.5525.1
Unique NamemRNA_H-elongata_contig197713.5525.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Match: D7FR05_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR05_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.860e-12
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   10 QLVVQFEDDADQDTGKTPHRRINSKLVLPQPDG 108
            +LVVQFEDDADQDTGKTPHRRINSKLVL QP G
Sbjct:  227 ELVVQFEDDADQDTGKTPHRRINSKLVLAQPGG 259
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BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Match: A0A1E7FYW9_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FYW9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 CFLQLVVQFEDDADQDTGKTPHRRINSKLVLPQP 102
            C  ++VVQFEDD D  TGKTP RR+ S+ V+P P
Sbjct:  259 CVKEIVVQFEDDEDTLTGKTPRRRVPSRYVIPTP 292
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BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Match: A0A448ZHU1_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHU1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.070e-5
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 CFLQLVVQFEDDADQDTGKTPHRRINSKLVLPQP 102
            C  ++VVQFEDD D  TGKTP RR+ S+ V+P P
Sbjct:  259 CVKEIVVQFEDDEDAVTGKTPKRRVPSRYVIPVP 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR05_ECTSI6.860e-1290.91SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A1E7FYW9_9STRA1.520e-558.82SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A448ZHU1_9STRA2.070e-558.82SGF29 C-terminal domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197713contigH-elongata_contig197713:806..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog2880.D7FR05
EggNOG free text desc.SGF29 tudor-like domain
EggNOG OGs2E9KP@1,2SFY2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.5977972-CDS-H-elongata_contig197713:805..9191622930117.5977972-CDS-H-elongata_contig197713:805..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197713 806..919 -
1691679287.4158356-CDS-H-elongata_contig197713:805..9191691679287.4158356-CDS-H-elongata_contig197713:805..919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197713 806..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197713.5525.1prot_H-elongata_contig197713.5525.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197713 806..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197713.5525.1

>prot_H-elongata_contig197713.5525.1 ID=prot_H-elongata_contig197713.5525.1|Name=mRNA_H-elongata_contig197713.5525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
CFLQLVVQFEDDADQDTGKTPHRRINSKLVLPQPDGP*
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mRNA from alignment at H-elongata_contig197713:806..919-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197713.5525.1 ID=mRNA_H-elongata_contig197713.5525.1|Name=mRNA_H-elongata_contig197713.5525.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig197713:806..919- (Himanthalia elongata Himel1 dioecious)
TGTTTTCTTCAGCTTGTGGTACAGTTCGAGGACGACGCCGACCAAGATAC
GGGAAAAACGCCTCATCGCAGGATCAACTCCAAGCTCGTCCTGCCTCAGC
CCGACGGACCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig197713:806..919-

>mRNA_H-elongata_contig197713.5525.1 ID=mRNA_H-elongata_contig197713.5525.1|Name=mRNA_H-elongata_contig197713.5525.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig197713:806..919- (Himanthalia elongata Himel1 dioecious)
TGTTTTCTTCAGCTTGTGGTACAGTTCGAGGACGACGCCGACCAAGATAC
GGGAAAAACGCCTCATCGCAGGATCAACTCCAAGCTCGTCCTGCCTCAGC
CCGACGGACCTTAGTGTTTTCTTCAGCTTGTGGTACAGTTCGAGGACGAC
GCCGACCAAGATACGGGAAAAACGCCTCATCGCAGGATCAACTCCAAGCT
CGTCCTGCCTCAGCCCGACGGACCTTAG
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