prot_H-elongata_contig197713.5525.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig197713.5525.1
Unique Nameprot_H-elongata_contig197713.5525.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length38
Homology
BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Match: D7FR05_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR05_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 6.860e-12
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0
Query:    4 QLVVQFEDDADQDTGKTPHRRINSKLVLPQPDG 36
            +LVVQFEDDADQDTGKTPHRRINSKLVL QP G
Sbjct:  227 ELVVQFEDDADQDTGKTPHRRINSKLVLAQPGG 259          
BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Match: A0A1E7FYW9_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FYW9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0
Query:    1 CFLQLVVQFEDDADQDTGKTPHRRINSKLVLPQP 34
            C  ++VVQFEDD D  TGKTP RR+ S+ V+P P
Sbjct:  259 CVKEIVVQFEDDEDTLTGKTPRRRVPSRYVIPTP 292          
BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Match: A0A448ZHU1_9STRA (SGF29 C-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZHU1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.070e-5
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0
Query:    1 CFLQLVVQFEDDADQDTGKTPHRRINSKLVLPQP 34
            C  ++VVQFEDD D  TGKTP RR+ S+ V+P P
Sbjct:  259 CVKEIVVQFEDDEDAVTGKTPKRRVPSRYVIPVP 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197713.5525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR05_ECTSI6.860e-1290.91SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A1E7FYW9_9STRA1.520e-558.82SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A448ZHU1_9STRA2.070e-558.82SGF29 C-terminal domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197713contigH-elongata_contig197713:806..919 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197713.5525.1mRNA_H-elongata_contig197713.5525.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig197713 806..919 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig197713.5525.1 ID=prot_H-elongata_contig197713.5525.1|Name=mRNA_H-elongata_contig197713.5525.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
CFLQLVVQFEDDADQDTGKTPHRRINSKLVLPQPDGP*
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