mRNA_H-elongata_contig197678.5521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197678.5521.1
Unique NamemRNA_H-elongata_contig197678.5521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.900e-19
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    4 AARHALREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            AARHAL  GWTC+D+ AEARETCRNWFYKTACIRELLPRILIE
Sbjct:  502 AARHALPRGWTCDDVSAEARETCRNWFYKTACIRELLPRILIE 544
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A6H5JSK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.380e-19
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    7 ARHALREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            ARHAL  GWTC+D+ AEARETCRNWFYKTACIRELLPRILIE
Sbjct:  102 ARHALPRGWTCDDVSAEARETCRNWFYKTACIRELLPRILIE 143
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: W4GKY1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKY1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.240e-13
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 HALREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            H L  G+TC D+  EA+ETCRNWFYKTACIRELLPRI  E
Sbjct:  294 HVLPHGFTCVDVDIEAKETCRNWFYKTACIRELLPRIYTE 333
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A024TLM6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLM6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 HALREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            HAL  G+T  D+  EA+ETCRNWFYKTACIRELLPRI  E
Sbjct:  304 HALPHGFTSGDVDIEAKETCRNWFYKTACIRELLPRIYTE 343
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A418AU07_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AU07_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.090e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   13 HALREGWTCEDIGAEARETCRNWFYKTACIRELLPRI 123
            HAL  G+T  D+  EA+ETCRNWFYKTACIRELLPRI
Sbjct:  296 HALPHGFTSGDVDIEAKETCRNWFYKTACIRELLPRI 332
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A024GSE6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSE6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.980e-11
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    7 ARHALREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            A  +L +G++  DI  +A ETCRNWFYKTACIRELLPRI IE
Sbjct:  307 ASSSLPQGFSSTDINVQAMETCRNWFYKTACIRELLPRIYIE 348
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A5D6XHA6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHA6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.870e-10
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   19 LREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            L E +   D+  +A+ETCRNWFYKTACIRELLPRI IE
Sbjct:  353 LAESFVSSDVNIQAKETCRNWFYKTACIRELLPRIYIE 390
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A0P1A9N7_PLAHL (Predicted membrane protein (Associated with esophageal cancer in humans) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9N7_PLAHL)

HSP 1 Score: 63.2 bits (152), Expect = 1.870e-10
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   19 LREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            L++ +   DI  +A+ETCRNWFYKTACIRELLPRI IE
Sbjct:  160 LKDNFMSSDINIQAKETCRNWFYKTACIRELLPRIYIE 197
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: K3WSD6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSD6_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 3.490e-10
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   19 LREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            L E +   D+   A+ETCRNWFYKTACIRELLPRI IE
Sbjct:  287 LSENFVSSDVNIHAKETCRNWFYKTACIRELLPRIYIE 324
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BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Match: A0A3M6VWN9_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VWN9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.770e-10
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   19 LREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE 132
            L E +T  DI  +A ETCRNWFYK+ACIRELLPRI IE
Sbjct:  301 LGEHFTSSDINVQATETCRNWFYKSACIRELLPRIYIE 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197678.5521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLV5_ECTSI2.900e-1988.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSK9_9PHAE7.380e-1988.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4GKY1_9STRA9.240e-1372.50Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024TLM6_9STRA6.000e-1272.50Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A418AU07_9STRA2.090e-1175.68Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024GSE6_9STRA9.980e-1166.67Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A5D6XHA6_9STRA1.870e-1068.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P1A9N7_PLAHL1.870e-1068.42Predicted membrane protein (Associated with esopha... [more]
K3WSD6_GLOUD3.490e-1068.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VWN9_9STRA4.770e-1071.05Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197678contigH-elongata_contig197678:189..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1e-15
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.2922833-CDS-H-elongata_contig197678:188..3201622930117.2922833-CDS-H-elongata_contig197678:188..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197678 189..320 +
1691679287.2823334-CDS-H-elongata_contig197678:188..3201691679287.2823334-CDS-H-elongata_contig197678:188..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197678 189..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197678.5521.1prot_H-elongata_contig197678.5521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197678 189..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197678.5521.1

>prot_H-elongata_contig197678.5521.1 ID=prot_H-elongata_contig197678.5521.1|Name=mRNA_H-elongata_contig197678.5521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
AAARHALREGWTCEDIGAEARETCRNWFYKTACIRELLPRILIE
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mRNA from alignment at H-elongata_contig197678:189..320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197678.5521.1 ID=mRNA_H-elongata_contig197678.5521.1|Name=mRNA_H-elongata_contig197678.5521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig197678:189..320+ (Himanthalia elongata Himel1 dioecious)
GCAGCGGCGCGACACGCTCTACGGGAAGGCTGGACCTGCGAAGACATTGG
TGCCGAGGCGCGGGAGACATGTAGAAACTGGTTCTACAAGACCGCGTGCA
TCCGCGAGCTGCTGCCGAGGATCCTCATCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig197678:189..320+

>mRNA_H-elongata_contig197678.5521.1 ID=mRNA_H-elongata_contig197678.5521.1|Name=mRNA_H-elongata_contig197678.5521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig197678:189..320+ (Himanthalia elongata Himel1 dioecious)
GCAGCGGCGCGACACGCTCTACGGGAAGGCTGGACCTGCGAAGACATTGG
TGCCGAGGCGCGGGAGACATGTAGAAACTGGTTCTACAAGACCGCGTGCA
TCCGCGAGCTGCTGCCGAGGATCCTCATCGAGGCAGCGGCGCGACACGCT
CTACGGGAAGGCTGGACCTGCGAAGACATTGGTGCCGAGGCGCGGGAGAC
ATGTAGAAACTGGTTCTACAAGACCGCGTGCATCCGCGAGCTGCTGCCGA
GGATCCTCATCGAG
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