mRNA_H-elongata_contig19735.5506.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19735.5506.1
Unique NamemRNA_H-elongata_contig19735.5506.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.290e-38
Identity = 163/480 (33.96%), Postives = 208/480 (43.33%), Query Frame = 2 
Query: 1607 LAPMGRGAGKRG----------GGAQESKPRGWGGPLGRIVGQLQQSGPVATSTSSVGESGTSI-----KDTCSGRGDSAGPDGVEACINRVERGGVFGPRGGIGRGGMGMASAFGRPGRGFGHE--RRHSAGAGVKYADGRGSVDRGDRGSQGGGGARKRGRGEWKKEYSVIASVDKE------------KEKNDDSKYACFQEFPTDMRPQAGDVLAFKTLSLNEETWTPELSAYREATVAAFDPATDRVMLLPSGAPVVYNWQQRSGGGEPGSKAQETAETAAEHENVLVEVEGKGESSRQSPSSGNTLPINAGRVEEAESARGKQTPADAGAAMGTVALPSGPEEGGKDLVAQVTVDH------------------------------------SSVSAAGAGKPAPVDDDGAKSEGDRVGQTGSGDDSGSGDRVDEDPGWVEYSTLANLRLIRGPSVQELEARKNAMARWSSLGP 2851
            L P GRGAG             GG Q      WGGPLGRIVGQL++  P   S S+ G +  +I     +    GRGDS              RGGVFGP  GIGRGGMGM    G  G G+ ++  RRHS G              GD     GG A+KRGRG WKK+Y VIASV+ +              +N D++Y  ++E PTDMRPQ  DVLAFKTLSLNEETWTPELS YR A V AFD ++  V LLP+                  S   +  +        LV    KG ++ Q    G++  I     EE       + P   G   G V   SG  +G +D  A                                          +   +  +GK    ++D    EG+                       +EYS+LAN+R++RGPS+ ELE RK A+ +W+SLGP
Sbjct:   11 LVPSGRGAGXXXXXXXXXXXXXGGQQH-----WGGPLGRIVGQLRR--PEGESESNGGGAAAAIAPLEPEGRAGGRGDS------------TARGGVFGPGRGIGRGGMGMTRGGGAAGGGYANKNTRRHSTG----------DTANGD-----GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPA------------------SIEDDNKDGXXXXXXXLVNGCTKGHTAGQQQQ-GSSSGITESNTEEG------RVPTSNGHNQGGV---SGNSKGMEDPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKARSTSSGKVGGAEEDRELREGEEE---------------------LEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGP 407
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.520e-31
Identity = 150/439 (34.17%), Postives = 198/439 (45.10%), Query Frame = 2 
Query: 1607 LAPMGRGAGKRG--------GGAQESKPRGWGGPLGRIVGQLQQSGPVATSTSSVGESGTSIKDTCSGRGDSAGPDGVEACINRVERGGVFGPRGGIGRGGMGMASAFGRPGRGFG--HERRHSAGAGVKYADGRGSVDRGDRGSQGGGGARKRGRGEWKKEYSVIASVDKE------------KEKNDDSKYACFQEFPTDMRPQAGDVLAFKTLSLNEETWTPELSAYREATVAAFDPATDRVMLLPSGAPVVYNWQQRSGGGEPGSKAQETAETAAEHENVLVEVEGKGESSRQSPSSGNTLPINAGRVEEA--ESARGKQTPADAGAAMGTVALPSGPEEGGKDLVAQVTVDHSSVSAAGAGKPAPVDDDGAKSEGDRVGQTGSGDDSGSGDRVDEDPGWVEYSTLANLRLIRGPSVQELEARKNAMARWSSLGP 2851
            L P GRGAG           GG Q      WGGPLGRIVGQL++  P   S S+ G +  +         +  G  G       V  GGVFGP       GMGM    G  G  +   + RRHS G              GD     GG A+KRGRG WKK+Y VIASV+ +              +N D++Y  ++E PTDMRPQ  DVLAFKTLSLNEETWTPELS YR A V AFD ++  V L P+             GG  GS A        +   V  + +G      +S +   ++P + G  E      ++G + PA    A+                             AG     P  D   K+     G+ G  ++       +E+   +EYS+LAN+R++RGPS+ EL+ RK A+ +W+SLGP
Sbjct:  474 LVPSGRGAGXXXXXXXXXXXGGQQH-----WGGPLGRIVGQLRR--PEGESESNGGGAAAATAPL-----EPEGRAGXXXXXXXV--GGVFGPGXXXXXXGMGMTRGGGFAGGRYADRNTRRHSTG----------HTANGD-----GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTE-----DDNKDGGGAGSGA--FVNDCTKGHTVGQQQQGSSSIIAESNTEEGSVPTSNGHNEGGFGGDSKGMEYPA----AVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAE-PTTDGRNKARSTSSGEVGGAEEDRELREGEEE---LEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGP 868
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 71.6 bits (174), Expect = 2.240e-11
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 2 
Query:   89 SPLAALRRIRVIF-SEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVR 352
            +P A   R+R++F +++   R L    L + W+++PPEL+ + DLA H+A +  R R++  S ++L++DGFVLPP ES  + R+NDI+R
Sbjct:    3 TPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIR 90
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-10
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 2 
Query:   53 RSAPEMDTSSQISPLAALRRIRVIF-SEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLAQNKDTQ 385
            R  P        +P A   R+R++F +++   R L    L + W+++PPEL+ + DLA H+A +  R R++  S ++L++DGFVLPP ES  + R+NDI+R++  A  + TQ
Sbjct:  123 RRPPRCQPPPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 233
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)

HSP 1 Score: 75.1 bits (183), Expect = 5.490e-10
Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 2 
Query:   89 SPLAALRRIRVIF-SEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLAQNKDTQ 385
            +P A   R+R++F +++   R L    L + W+++PPEL+ + DLA H+A +  R R++  S ++L++DGFVLPP ES  + R+NDI+R++  A  + TQ
Sbjct:    3 TPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 101
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A6G1BQ98_9ORYZ (Coilin n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BQ98_9ORYZ)

HSP 1 Score: 72.4 bits (176), Expect = 3.640e-9
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 2 
Query:   89 SPLAALRRIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLAQNKDTQ 385
            +P A + R+R++F  +   R       L+R W+++PPELA + DLA H+A +  R R +    ++L++DGFVLPP ES  + R+NDI+R++     K TQ
Sbjct:    3 TPPAQVVRLRLVFDNQRLLRRSQRESGLRRCWLLLPPELATVADLAAHIAARF-RLRYSCPGCVILSIDGFVLPPFESTCIFRDNDIIRVKQKISKKITQ 101
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A3L6G677_MAIZE (Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G677_MAIZE)

HSP 1 Score: 65.5 bits (158), Expect = 7.540e-8
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:  110 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 358
            R+R+IF      R +   + L+R W+++ PELA + +LA H+A +  R R+T    +VL++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLIFENSRLLRRVQRDEGLRRCWLLLSPELATVANLAAHVAARF-RLRRTCPRGVVLSMDGFTLPPFESTCIFRDNDIIRVK 95
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BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: UPI0019D6AB8C (coilin-like isoform X1 n=3 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6AB8C)

HSP 1 Score: 67.0 bits (162), Expect = 1.730e-7
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  110 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 358
            R+R++F  +   R     + L+R W+++ PELA + DLA H+A +  R R+  +S ++L++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLVFENRRLLRRTERDEGLRRCWLLLRPELATVADLASHVAARF-RLRRFCSSGIILSMDGFALPPFESTCIFRDNDIIRVK 95
[Close]
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A3L6GBK5_MAIZE (Coilin n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6GBK5_MAIZE)

HSP 1 Score: 63.5 bits (153), Expect = 3.380e-7
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  110 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 358
            R+R++F      + +   + L+R W+++ PEL  + DLA H+A +  R R+T    +VL++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLLFENSRLLQRVQRDEGLRRCWLLLSPELGTVADLAAHVAARF-RLRRTCPRGVVLSMDGFTLPPFESTCIFRDNDIIRVK 95
[Close]
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)

HSP 1 Score: 64.3 bits (155), Expect = 3.730e-7
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:   59 APEMDTSSQISPLAALRRIRVIFSEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 358
            AP M T     P     R+R++F +KT         L + W+++ PELA + DL+ H+A + + +R      +VLT+DGF LPP ES  + R+ DI+R++
Sbjct:   24 APPMATPPAXXPSPV--RLRLVF-DKTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHRSCPGG-VVLTMDGFALPPFESTCIFRDKDIIRVQ 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FZW0_ECTSI5.290e-3833.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE3.520e-3134.17Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A0P0Y9A7_ORYSJ2.240e-1140.45Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
B8BP67_ORYSI1.200e-1036.61Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP6... [more]
A0A0E0RG41_ORYRU5.490e-1039.00Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_O... [more]
A0A6G1BQ98_9ORYZ3.640e-939.00Coilin n=1 Tax=Oryza meyeriana var. granulata TaxI... [more]
A0A3L6G677_MAIZE7.540e-840.48Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G67... [more]
UPI0019D6AB8C1.730e-739.29coilin-like isoform X1 n=3 Tax=Panicum virgatum Ta... [more]
A0A3L6GBK5_MAIZE3.380e-738.10Coilin n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6GBK... [more]
A0A452ZID7_AEGTS3.730e-736.00Coilin n=1 Tax=Aegilops tauschii subsp. strangulat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19735contigH-elongata_contig19735:2027..6099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.9
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog40148.OGLUM12G10240.1
KEGG koko:K13150
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0017069,GO:0030619,GO:0030620,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.isoform X1
EggNOG OGs2CND1@1,2QVBB@2759,37KDR@33090,3G93U@35493,3IDIA@38820,3KMPB@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size3287
Cds size3069
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19735.5506.1prot_H-elongata_contig19735.5506.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19735 2178..6032 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.086096-UTR-H-elongata_contig19735:2026..21771622930116.086096-UTR-H-elongata_contig19735:2026..2177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19735 2027..2177 -
1691679286.671795-UTR-H-elongata_contig19735:2026..21771691679286.671795-UTR-H-elongata_contig19735:2026..2177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19735 2027..2177 -
1622930116.1391902-UTR-H-elongata_contig19735:6032..60991622930116.1391902-UTR-H-elongata_contig19735:6032..6099Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19735 6033..6099 -
1691679286.7163866-UTR-H-elongata_contig19735:6032..60991691679286.7163866-UTR-H-elongata_contig19735:6032..6099Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19735 6033..6099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.0982087-CDS-H-elongata_contig19735:2177..30711622930116.0982087-CDS-H-elongata_contig19735:2177..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19735 2178..3071 -
1691679286.683899-CDS-H-elongata_contig19735:2177..30711691679286.683899-CDS-H-elongata_contig19735:2177..3071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19735 2178..3071 -
1622930116.1134043-CDS-H-elongata_contig19735:3630..37571622930116.1134043-CDS-H-elongata_contig19735:3630..3757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19735 3631..3757 -
1691679286.6950426-CDS-H-elongata_contig19735:3630..37571691679286.6950426-CDS-H-elongata_contig19735:3630..3757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19735 3631..3757 -
1622930116.12765-CDS-H-elongata_contig19735:3984..60321622930116.12765-CDS-H-elongata_contig19735:3984..6032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19735 3985..6032 -
1691679286.706493-CDS-H-elongata_contig19735:3984..60321691679286.706493-CDS-H-elongata_contig19735:3984..6032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19735 3985..6032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19735.5506.1

>prot_H-elongata_contig19735.5506.1 ID=prot_H-elongata_contig19735.5506.1|Name=mRNA_H-elongata_contig19735.5506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1023bp
MDTSSQISPLAALRRIRVIFSEKTGCRPLTSPKLLKRWVMIPPELAVIGD
LAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLA
QNKDTQRCGDADRCGMNSSTNFTGKNRSGRRTPKQVTGSHRMNADVIQRE
TKKSKKRAGPLAISSVLSSKPGERKARLGSGKAGTSQNASNAISAKRRKI
ASSSPSDDVSGGPSGIRKGKTKTRHDPGIKIKARTTHAKSPADRTASETS
GGGIEAGSSRTTSAPTVAKKKKRKEKAPGGRAAAKTRDSSSSSKDTSSDE
NDSSSSDDEEPSSPVREESSYEEGSSAASPAQDASASKGAQKAKKNADER
VKPTEAKSPDEGSKRGSTRAMGGVDVSEPVSMSSTRGRRKSPKKPQSNDA
SGHHRGTGGDAGASASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTESS
SDSEDQEDAGSRHAQKKNTPLNMRAPATAAVASSACRGKEGRGGVASMSA
PPPAENQPTRSAGLAPMGRGAGKRGGGAQESKPRGWGGPLGRIVGQLQQS
GPVATSTSSVGESGTSIKDTCSGRGDSAGPDGVEACINRVERGGVFGPRG
GIGRGGMGMASAFGRPGRGFGHERRHSAGAGVKYADGRGSVDRGDRGSQG
GGGARKRGRGEWKKEYSVIASVDKEKEKNDDSKYACFQEFPTDMRPQAGD
VLAFKTLSLNEETWTPELSAYREATVAAFDPATDRVMLLPSGAPVVYNWQ
QRSGGGEPGSKAQETAETAAEHENVLVEVEGKGESSRQSPSSGNTLPINA
GRVEEAESARGKQTPADAGAAMGTVALPSGPEEGGKDLVAQVTVDHSSVS
AAGAGKPAPVDDDGAKSEGDRVGQTGSGDDSGSGDRVDEDPGWVEYSTLA
NLRLIRGPSVQELEARKNAMARWSSLGPPERVQKDSGCPALEIATVATPP
ALETHGGKEKPKRRVSGTKAAASPKNGGGKRKSKGKAGGTLAIGGLARIM
AEVSEKNIAQSIPSSSSGSVPT*
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mRNA from alignment at H-elongata_contig19735:2027..6099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19735.5506.1 ID=mRNA_H-elongata_contig19735.5506.1|Name=mRNA_H-elongata_contig19735.5506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4073bp|location=Sequence derived from alignment at H-elongata_contig19735:2027..6099- (Himanthalia elongata Himel1 dioecious)
GCCAAAAGTACAGCCACACCAGTAGATGTAAGTTTTCATGTGGGCATAAA
CTAGATCTGCGCCAGAGATGGACACTAGTTCACAAATATCGCCGCTAGCA
GCCCTGCGTCGGATCCGTGTGATATTTTCAGAGAAGACAGGATGTAGGCC
GCTCACGAGTCCCAAACTGCTGAAGCGTTGGGTGATGATCCCTCCCGAGC
TTGCCGTCATCGGTGATCTTGCTCACCACCTTGCGAGGCAGCTGAAGCGT
AACCGCAAGACTTCAGCATCTACTCTCGTGCTCACGCTTGATGGCTTCGT
CCTTCCACCCACGGAGAGTCTGGACCTCCTGCGAGAAAACGATATCGTGA
GGCTAGAGTTGCTTGCCCAGAACAAGGACACTCAAAGGTGTGGGGATGCG
GATAGGTGTGGGATGAACTCGTCCACAAATTTCACTGGGAAGAATAGGTC
AGGGCGTCGAACGCCGAAGCAGGTCACTGGTTCCCATAGGATGAACGCTG
ATGTAATTCAGAGAGAAACGAAGAAAAGCAAGAAGAGAGCCGGACCCCTC
GCTATCTCTTCCGTCCTGTCTTCGAAGCCCGGAGAGAGGAAGGCTCGATT
GGGTAGTGGTAAGGCGGGGACTTCCCAAAACGCCTCCAACGCTATCTCGG
CGAAGAGACGGAAGATCGCCTCTTCTTCGCCTTCCGATGATGTCAGCGGT
GGGCCAAGCGGTATTAGGAAGGGGAAGACGAAGACGAGACATGATCCTGG
CATCAAGATAAAGGCGAGGACAACGCACGCCAAAAGCCCCGCGGATCGAA
CGGCTAGTGAGACTTCTGGCGGAGGCATTGAGGCCGGCAGCAGCAGAACT
ACATCTGCGCCGACGGTGGCCAAGAAAAAAAAACGCAAAGAAAAAGCGCC
AGGAGGTCGTGCTGCGGCGAAGACTCGCGACAGTAGTAGCAGCAGCAAGG
ATACTTCTTCCGACGAAAACGATTCCTCGAGTTCGGACGATGAGGAACCT
TCGTCGCCAGTGAGAGAAGAGTCGTCCTACGAGGAGGGATCTTCCGCCGC
CTCTCCGGCACAGGATGCTTCTGCCTCGAAAGGCGCGCAGAAGGCGAAAA
AAAACGCTGACGAACGCGTAAAACCGACGGAGGCAAAGAGCCCCGACGAG
GGGAGCAAAAGAGGCAGCACCAGGGCGATGGGTGGAGTGGACGTTAGCGA
GCCTGTGTCGATGTCTTCGACGAGAGGGCGGAGGAAGTCACCCAAAAAGC
CCCAATCCAATGACGCGAGCGGACACCACCGAGGTACGGGAGGCGATGCG
GGTGCATCAGCTTCCTCATCCTCTTCTTCGTCATCCTCTTCCTCTTCTTC
GTCATCCTCTTCCTCTTCTTCGTCGTCCTCCTCCTCTTCTTCGTCATCCT
CTTCGACCGAATCGTCCTCTGATAGCGAAGATCAAGAGGACGCCGGCAGC
CGCCACGCACAAAAAAAAAACACGCCTCTAAATATGAGAGCTCCTGCTAC
TGCCGCCGTCGCAAGCAGCGCCTGTCGCGGGAAGGAAGGAAGGGGAGGTG
TGGCAAGCATGTCCGCCCCTCCCCCCGCCGAGAACCAGCCAACGCGTTCT
GCTGGTCTGGCTCCGATGGGTAGGGGGGCTGGAAAAAGAGGTGGTGGCGC
CCAAGAGAGCAAACCACGAGGCTGGGGTGGACCACTTGGACGAATCGTTG
GTCAACTCCAACAGTCAGGGCCGGTAGCGACATCGACGTCTTCGGTGGGA
GAAAGCGGAACTTCTATCAAAGATACGTGCAGCGGTAGAGGAGACAGTGC
CGGGCCAGACGGCGTGGAGGCCTGCATCAATAGAGTGGAACGAGGAGGCG
TGTTTGGACCGAGAGGAGGGATTGGACGCGGCGGGATGGGGATGGCCAGT
GCATTCGGGCGTCCTGGTAGGGGTTTTGGTCACGAGCGGCGACACAGCGC
TGGTGCTGGTGTGAAATATGCTGATGGTCGTGGGTCGGTCGACAGGGGGG
ATCGAGGGAGCCAAGGCGGGGGTGGCGCGAGGAAGCGAGGGCGAGGAGAA
TGGAAAAAAGAATATAGCGTGATTGCCTCCGTGGACAAGGAGAAAGAAAA
GAACGACGACTCCAAGTGAGCGCTTTTAGGGCAACCATTTGACATACACC
ACTATTAATAATGCTTGCCTCAGAACAATGACAAGTAGGTATCTTCAAAC
AACATCGAAATATCAAGTATTCCCGTATCTGTCTGAACACGGGCGCGCCG
CGTTTTTTGTGGTTCCCACCCACACTCTGATCTCACTTCCTATAATGTTC
GGCGCCTTTTGCATCGCTTTTCGATGGTGGTGACTATGAAAGATACGCAT
GTTTTCAGGAGTTCCCAACCGATATGCGTCCGCAAGCGGGTGATGTTCTG
GCGTTCAAGACGCTGTCTCTCAACGAGGAGACCTGGACGCCTGAGCTATC
TGCGTACAGAGAGGCAACCGTGAGTCTGGAGAGAGACGGGCAACGTTGAC
ACGCGCTTCCTTGTCTTGGTATGCTGTGGAAACCGCGGCCGGCTAAGTTA
GTCATCGTAAATGGTAGACAGCGACTTATATTAGTAGTAGAACGCACGCC
GGGGATGGAGCTGGAAATCTCCCTATTTTCTTGAGATAAGTATGCCGGTA
GCTGAACGAAAGACTCCGATTTATGAGAGATCTCCTCGAGGTCTTTCCAA
CAACACACTCTGACGTGCCTGCAGCCCTCTTCCTGCGGAGGACGTTGGCA
GAGGACATTTTGGTCCTTGTTCCCCCCCCCCCGGGGGAGGGATTTTATTC
CACCTCTCTGACGATATATAGTAGAAACACGCGCATATAGAGTTGAAGAC
AGAGACCCCAATGCGTCAAGTACAAATCGCAAAATGGACCCTCGCGTTCG
GGAAGCCTCCTCGTTCAGTTCAACCCGCTCCCATGTACGATCAAGCCAGT
CCCAGAGACGGGAAGCTGCTATACTTGTAATGACAGTATTTTCATCTCAC
AGCATTTTTTTTCTCATATATGAACCAGGTGGCGGCCTTCGACCCTGCGA
CCGACCGAGTCATGCTCTTGCCCTCCGGCGCGCCAGTCGTCTACAACTGG
CAACAGCGCAGTGGAGGTGGTGAGCCCGGAAGTAAAGCCCAAGAGACAGC
AGAGACAGCAGCGGAACACGAAAATGTTCTGGTCGAGGTCGAAGGGAAAG
GGGAAAGCTCGAGACAGTCTCCTTCGTCAGGAAATACGCTCCCAATAAAC
GCGGGGCGGGTGGAGGAAGCTGAGAGCGCGCGGGGAAAGCAAACTCCGGC
GGATGCGGGAGCTGCCATGGGGACGGTGGCTCTGCCCAGTGGTCCGGAAG
AAGGCGGGAAAGACCTTGTAGCGCAGGTAACGGTTGATCATAGTTCCGTC
TCTGCAGCCGGCGCGGGTAAGCCTGCTCCGGTGGATGATGATGGTGCTAA
AAGCGAAGGGGATAGGGTGGGGCAGACGGGCAGCGGTGACGATAGCGGCA
GTGGTGACCGCGTAGATGAAGACCCTGGCTGGGTCGAATACAGCACCCTA
GCCAACCTCCGCCTGATCCGAGGACCCTCGGTTCAGGAATTGGAAGCGCG
AAAGAATGCCATGGCCAGGTGGAGCTCGCTTGGGCCTCCTGAACGGGTGC
AGAAAGACTCCGGATGCCCGGCATTGGAGATCGCGACAGTGGCAACACCT
CCCGCGTTAGAAACTCATGGTGGAAAGGAAAAGCCGAAGCGCAGGGTTTC
GGGGACGAAAGCGGCTGCGTCCCCGAAAAACGGTGGGGGTAAGCGGAAGA
GCAAGGGCAAGGCGGGTGGGACGCTGGCGATCGGGGGATTGGCTAGGATC
ATGGCGGAGGTCAGCGAGAAGAATATAGCACAAAGTATTCCTTCAAGCAG
TTCGGGGTCGGTACCAACGTGAGCTGAAGCTGTGCAGTGGAGAGCATTGG
CGTGGAATTTGATCTCCGTGTAGGCCCGGAGTGGATGACGCAGCATATCT
GATGGGGAGTAATTTCTTAACTGTACCCCGGTTTGTGGAGAAATTGATAA
TTATTCCCCTTCCAACGATCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig19735:2027..6099-

>mRNA_H-elongata_contig19735.5506.1 ID=mRNA_H-elongata_contig19735.5506.1|Name=mRNA_H-elongata_contig19735.5506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6138bp|location=Sequence derived from alignment at H-elongata_contig19735:2027..6099- (Himanthalia elongata Himel1 dioecious)
ATGGACACTAGTTCACAAATATCGCCGCTAGCAGCCCTGCGTCGGATCCG
TGTGATATTTTCAGAGAAGACAGGATGTAGGCCGCTCACGAGTCCCAAAC
TGCTGAAGCGTTGGGTGATGATCCCTCCCGAGCTTGCCGTCATCGGTGAT
CTTGCTCACCACCTTGCGAGGCAGCTGAAGCGTAACCGCAAGACTTCAGC
ATCTACTCTCGTGCTCACGCTTGATGGCTTCGTCCTTCCACCCACGGAGA
GTCTGGACCTCCTGCGAGAAAACGATATCGTGAGGCTAGAGTTGCTTGCC
CAGAACAAGGACACTCAAAGGTGTGGGGATGCGGATAGGTGTGGGATGAA
CTCGTCCACAAATTTCACTGGGAAGAATAGGTCAGGGCGTCGAACGCCGA
AGCAGGTCACTGGTTCCCATAGGATGAACGCTGATGTAATTCAGAGAGAA
ACGAAGAAAAGCAAGAAGAGAGCCGGACCCCTCGCTATCTCTTCCGTCCT
GTCTTCGAAGCCCGGAGAGAGGAAGGCTCGATTGGGTAGTGGTAAGGCGG
GGACTTCCCAAAACGCCTCCAACGCTATCTCGGCGAAGAGACGGAAGATC
GCCTCTTCTTCGCCTTCCGATGATGTCAGCGGTGGGCCAAGCGGTATTAG
GAAGGGGAAGACGAAGACGAGACATGATCCTGGCATCAAGATAAAGGCGA
GGACAACGCACGCCAAAAGCCCCGCGGATCGAACGGCTAGTGAGACTTCT
GGCGGAGGCATTGAGGCCGGCAGCAGCAGAACTACATCTGCGCCGACGGT
GGCCAAGAAAAAAAAACGCAAAGAAAAAGCGCCAGGAGGTCGTGCTGCGG
CGAAGACTCGCGACAGTAGTAGCAGCAGCAAGGATACTTCTTCCGACGAA
AACGATTCCTCGAGTTCGGACGATGAGGAACCTTCGTCGCCAGTGAGAGA
AGAGTCGTCCTACGAGGAGGGATCTTCCGCCGCCTCTCCGGCACAGGATG
CTTCTGCCTCGAAAGGCGCGCAGAAGGCGAAAAAAAACGCTGACGAACGC
GTAAAACCGACGGAGGCAAAGAGCCCCGACGAGGGGAGCAAAAGAGGCAG
CACCAGGGCGATGGGTGGAGTGGACGTTAGCGAGCCTGTGTCGATGTCTT
CGACGAGAGGGCGGAGGAAGTCACCCAAAAAGCCCCAATCCAATGACGCG
AGCGGACACCACCGAGGTACGGGAGGCGATGCGGGTGCATCAGCTTCCTC
ATCCTCTTCTTCGTCATCCTCTTCCTCTTCTTCGTCATCCTCTTCCTCTT
CTTCGTCGTCCTCCTCCTCTTCTTCGTCATCCTCTTCGACCGAATCGTCC
TCTGATAGCGAAGATCAAGAGGACGCCGGCAGCCGCCACGCACAAAAAAA
AAACACGCCTCTAAATATGAGAGCTCCTGCTACTGCCGCCGTCGCAAGCA
GCGCCTGTCGCGGGAAGGAAGGAAGGGGAGGTGTGGCAAGCATGTCCGCC
CCTCCCCCCGCCGAGAACCAGCCAACGCGTTCTGCTGGTCTGGCTCCGAT
GGGTAGGGGGGCTGGAAAAAGAGGTGGTGGCGCCCAAGAGAGCAAACCAC
GAGGCTGGGGTGGACCACTTGGACGAATCGTTGGTCAACTCCAACAGTCA
GGGCCGGTAGCGACATCGACGTCTTCGGTGGGAGAAAGCGGAACTTCTAT
CAAAGATACGTGCAGCGGTAGAGGAGACAGTGCCGGGCCAGACGGCGTGG
AGGCCTGCATCAATAGAGTGGAACGAGGAGGCGTGTTTGGACCGAGAGGA
GGGATTGGACGCGGCGGGATGGGGATGGCCAGTGCATTCGGGCGTCCTGG
TAGGGGTTTTGGTCACGAGCGGCGACACAGCGCTGGTGCTGGTGTGAAAT
ATGCTGATGGTCGTGGGTCGGTCGACAGGGGGGATCGAGGGAGCCAAGGC
GGGGGTGGCGCGAGGAAGCGAGGGCGAGGAGAATGGAAAAAAGAATATAG
CGTGATTGCCTCCGTGGACAAGGAGAAAGAAAAGAACGACGACTCCAAAT
GGACACTAGTTCACAAATATCGCCGCTAGCAGCCCTGCGTCGGATCCGTG
TGATATTTTCAGAGAAGACAGGATGTAGGCCGCTCACGAGTCCCAAACTG
CTGAAGCGTTGGGTGATGATCCCTCCCGAGCTTGCCGTCATCGGTGATCT
TGCTCACCACCTTGCGAGGCAGCTGAAGCGTAACCGCAAGACTTCAGCAT
CTACTCTCGTGCTCACGCTTGATGGCTTCGTCCTTCCACCCACGGAGAGT
CTGGACCTCCTGCGAGAAAACGATATCGTGAGGCTAGAGTTGCTTGCCCA
GAACAAGGACACTCAAAGGTGTGGGGATGCGGATAGGTGTGGGATGAACT
CGTCCACAAATTTCACTGGGAAGAATAGGTCAGGGCGTCGAACGCCGAAG
CAGGTCACTGGTTCCCATAGGATGAACGCTGATGTAATTCAGAGAGAAAC
GAAGAAAAGCAAGAAGAGAGCCGGACCCCTCGCTATCTCTTCCGTCCTGT
CTTCGAAGCCCGGAGAGAGGAAGGCTCGATTGGGTAGTGGTAAGGCGGGG
ACTTCCCAAAACGCCTCCAACGCTATCTCGGCGAAGAGACGGAAGATCGC
CTCTTCTTCGCCTTCCGATGATGTCAGCGGTGGGCCAAGCGGTATTAGGA
AGGGGAAGACGAAGACGAGACATGATCCTGGCATCAAGATAAAGGCGAGG
ACAACGCACGCCAAAAGCCCCGCGGATCGAACGGCTAGTGAGACTTCTGG
CGGAGGCATTGAGGCCGGCAGCAGCAGAACTACATCTGCGCCGACGGTGG
CCAAGAAAAAAAAACGCAAAGAAAAAGCGCCAGGAGGTCGTGCTGCGGCG
AAGACTCGCGACAGTAGTAGCAGCAGCAAGGATACTTCTTCCGACGAAAA
CGATTCCTCGAGTTCGGACGATGAGGAACCTTCGTCGCCAGTGAGAGAAG
AGTCGTCCTACGAGGAGGGATCTTCCGCCGCCTCTCCGGCACAGGATGCT
TCTGCCTCGAAAGGCGCGCAGAAGGCGAAAAAAAACGCTGACGAACGCGT
AAAACCGACGGAGGCAAAGAGCCCCGACGAGGGGAGCAAAAGAGGCAGCA
CCAGGGCGATGGGTGGAGTGGACGTTAGCGAGCCTGTGTCGATGTCTTCG
ACGAGAGGGCGGAGGAAGTCACCCAAAAAGCCCCAATCCAATGACGCGAG
CGGACACCACCGAGGTACGGGAGGCGATGCGGGTGCATCAGCTTCCTCAT
CCTCTTCTTCGTCATCCTCTTCCTCTTCTTCGTCATCCTCTTCCTCTTCT
TCGTCGTCCTCCTCCTCTTCTTCGTCATCCTCTTCGACCGAATCGTCCTC
TGATAGCGAAGATCAAGAGGACGCCGGCAGCCGCCACGCACAAAAAAAAA
ACACGCCTCTAAATATGAGAGCTCCTGCTACTGCCGCCGTCGCAAGCAGC
GCCTGTCGCGGGAAGGAAGGAAGGGGAGGTGTGGCAAGCATGTCCGCCCC
TCCCCCCGCCGAGAACCAGCCAACGCGTTCTGCTGGTCTGGCTCCGATGG
GTAGGGGGGCTGGAAAAAGAGGTGGTGGCGCCCAAGAGAGCAAACCACGA
GGCTGGGGTGGACCACTTGGACGAATCGTTGGTCAACTCCAACAGTCAGG
GCCGGTAGCGACATCGACGTCTTCGGTGGGAGAAAGCGGAACTTCTATCA
AAGATACGTGCAGCGGTAGAGGAGACAGTGCCGGGCCAGACGGCGTGGAG
GCCTGCATCAATAGAGTGGAACGAGGAGGCGTGTTTGGACCGAGAGGAGG
GATTGGACGCGGCGGGATGGGGATGGCCAGTGCATTCGGGCGTCCTGGTA
GGGGTTTTGGTCACGAGCGGCGACACAGCGCTGGTGCTGGTGTGAAATAT
GCTGATGGTCGTGGGTCGGTCGACAGGGGGGATCGAGGGAGCCAAGGCGG
GGGTGGCGCGAGGAAGCGAGGGCGAGGAGAATGGAAAAAAGAATATAGCG
TGATTGCCTCCGTGGACAAGGAGAAAGAAAAGAACGACGACTCCAAATAC
GCATGTTTTCAGGAGTTCCCAACCGATATGCGTCCGCAAGCGGGTGATGT
TCTGGCGTTCAAGACGCTGTCTCTCAACGAGGAGACCTGGACGCCTGAGC
TATCTGCGTACAGAGAGGCAACCATACGCATGTTTTCAGGAGTTCCCAAC
CGATATGCGTCCGCAAGCGGGTGATGTTCTGGCGTTCAAGACGCTGTCTC
TCAACGAGGAGACCTGGACGCCTGAGCTATCTGCGTACAGAGAGGCAACC
GTGGCGGCCTTCGACCCTGCGACCGACCGAGTCATGCTCTTGCCCTCCGG
CGCGCCAGTCGTCTACAACTGGCAACAGCGCAGTGGAGGTGGTGAGCCCG
GAAGTAAAGCCCAAGAGACAGCAGAGACAGCAGCGGAACACGAAAATGTT
CTGGTCGAGGTCGAAGGGAAAGGGGAAAGCTCGAGACAGTCTCCTTCGTC
AGGAAATACGCTCCCAATAAACGCGGGGCGGGTGGAGGAAGCTGAGAGCG
CGCGGGGAAAGCAAACTCCGGCGGATGCGGGAGCTGCCATGGGGACGGTG
GCTCTGCCCAGTGGTCCGGAAGAAGGCGGGAAAGACCTTGTAGCGCAGGT
AACGGTTGATCATAGTTCCGTCTCTGCAGCCGGCGCGGGTAAGCCTGCTC
CGGTGGATGATGATGGTGCTAAAAGCGAAGGGGATAGGGTGGGGCAGACG
GGCAGCGGTGACGATAGCGGCAGTGGTGACCGCGTAGATGAAGACCCTGG
CTGGGTCGAATACAGCACCCTAGCCAACCTCCGCCTGATCCGAGGACCCT
CGGTTCAGGAATTGGAAGCGCGAAAGAATGCCATGGCCAGGTGGAGCTCG
CTTGGGCCTCCTGAACGGGTGCAGAAAGACTCCGGATGCCCGGCATTGGA
GATCGCGACAGTGGCAACACCTCCCGCGTTAGAAACTCATGGTGGAAAGG
AAAAGCCGAAGCGCAGGGTTTCGGGGACGAAAGCGGCTGCGTCCCCGAAA
AACGGTGGGGGTAAGCGGAAGAGCAAGGGCAAGGCGGGTGGGACGCTGGC
GATCGGGGGATTGGCTAGGATCATGGCGGAGGTCAGCGAGAAGAATATAG
CACAAAGTATTCCTTCAAGCAGTTCGGGGTCGGTACCAACGTGAGTGGCG
GCCTTCGACCCTGCGACCGACCGAGTCATGCTCTTGCCCTCCGGCGCGCC
AGTCGTCTACAACTGGCAACAGCGCAGTGGAGGTGGTGAGCCCGGAAGTA
AAGCCCAAGAGACAGCAGAGACAGCAGCGGAACACGAAAATGTTCTGGTC
GAGGTCGAAGGGAAAGGGGAAAGCTCGAGACAGTCTCCTTCGTCAGGAAA
TACGCTCCCAATAAACGCGGGGCGGGTGGAGGAAGCTGAGAGCGCGCGGG
GAAAGCAAACTCCGGCGGATGCGGGAGCTGCCATGGGGACGGTGGCTCTG
CCCAGTGGTCCGGAAGAAGGCGGGAAAGACCTTGTAGCGCAGGTAACGGT
TGATCATAGTTCCGTCTCTGCAGCCGGCGCGGGTAAGCCTGCTCCGGTGG
ATGATGATGGTGCTAAAAGCGAAGGGGATAGGGTGGGGCAGACGGGCAGC
GGTGACGATAGCGGCAGTGGTGACCGCGTAGATGAAGACCCTGGCTGGGT
CGAATACAGCACCCTAGCCAACCTCCGCCTGATCCGAGGACCCTCGGTTC
AGGAATTGGAAGCGCGAAAGAATGCCATGGCCAGGTGGAGCTCGCTTGGG
CCTCCTGAACGGGTGCAGAAAGACTCCGGATGCCCGGCATTGGAGATCGC
GACAGTGGCAACACCTCCCGCGTTAGAAACTCATGGTGGAAAGGAAAAGC
CGAAGCGCAGGGTTTCGGGGACGAAAGCGGCTGCGTCCCCGAAAAACGGT
GGGGGTAAGCGGAAGAGCAAGGGCAAGGCGGGTGGGACGCTGGCGATCGG
GGGATTGGCTAGGATCATGGCGGAGGTCAGCGAGAAGAATATAGCACAAA
GTATTCCTTCAAGCAGTTCGGGGTCGGTACCAACGTGA
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