prot_H-elongata_contig19735.5506.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19735.5506.1
Unique Nameprot_H-elongata_contig19735.5506.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1023
Homology
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 4.700e-38
Identity = 163/480 (33.96%), Postives = 208/480 (43.33%), Query Frame = 0
Query:  514 LAPMGRGAGKRG----------GGAQESKPRGWGGPLGRIVGQLQQSGPVATSTSSVGESGTSI-----KDTCSGRGDSAGPDGVEACINRVERGGVFGPRGGIGRGGMGMASAFGRPGRGFGHE--RRHSAGAGVKYADGRGSVDRGDRGSQGGGGARKRGRGEWKKEYSVIASVDKE------------KEKNDDSKYACFQEFPTDMRPQAGDVLAFKTLSLNEETWTPELSAYREATVAAFDPATDRVMLLPSGAPVVYNWQQRSGGGEPGSKAQETAETAAEHENVLVEVEGKGESSRQSPSSGNTLPINAGRVEEAESARGKQTPADAGAAMGTVALPSGPEEGGKDLVAQVTVDH------------------------------------SSVSAAGAGKPAPVDDDGAKSEGDRVGQTGSGDDSGSGDRVDEDPGWVEYSTLANLRLIRGPSVQELEARKNAMARWSSLGP 928
            L P GRGAG             GG Q      WGGPLGRIVGQL++  P   S S+ G +  +I     +    GRGDS              RGGVFGP  GIGRGGMGM    G  G G+ ++  RRHS G              GD     GG A+KRGRG WKK+Y VIASV+ +              +N D++Y  ++E PTDMRPQ  DVLAFKTLSLNEETWTPELS YR A V AFD ++  V LLP+                  S   +  +        LV    KG ++ Q    G++  I     EE       + P   G   G V   SG  +G +D  A                                          +   +  +GK    ++D    EG+                       +EYS+LAN+R++RGPS+ ELE RK A+ +W+SLGP
Sbjct:   11 LVPSGRGAGXXXXXXXXXXXXXGGQQH-----WGGPLGRIVGQLRR--PEGESESNGGGAAAAIAPLEPEGRAGGRGDS------------TARGGVFGPGRGIGRGGMGMTRGGGAAGGGYANKNTRRHSTG----------DTANGD-----GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPA------------------SIEDDNKDGXXXXXXXLVNGCTKGHTAGQQQQ-GSSSGITESNTEEG------RVPTSNGHNQGGV---SGNSKGMEDPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKARSTSSGKVGGAEEDRELREGEEE---------------------LEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGP 407          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.990e-31
Identity = 150/439 (34.17%), Postives = 198/439 (45.10%), Query Frame = 0
Query:  514 LAPMGRGAGKRG--------GGAQESKPRGWGGPLGRIVGQLQQSGPVATSTSSVGESGTSIKDTCSGRGDSAGPDGVEACINRVERGGVFGPRGGIGRGGMGMASAFGRPGRGFG--HERRHSAGAGVKYADGRGSVDRGDRGSQGGGGARKRGRGEWKKEYSVIASVDKE------------KEKNDDSKYACFQEFPTDMRPQAGDVLAFKTLSLNEETWTPELSAYREATVAAFDPATDRVMLLPSGAPVVYNWQQRSGGGEPGSKAQETAETAAEHENVLVEVEGKGESSRQSPSSGNTLPINAGRVEEA--ESARGKQTPADAGAAMGTVALPSGPEEGGKDLVAQVTVDHSSVSAAGAGKPAPVDDDGAKSEGDRVGQTGSGDDSGSGDRVDEDPGWVEYSTLANLRLIRGPSVQELEARKNAMARWSSLGP 928
            L P GRGAG           GG Q      WGGPLGRIVGQL++  P   S S+ G +  +         +  G  G       V  GGVFGP       GMGM    G  G  +   + RRHS G              GD     GG A+KRGRG WKK+Y VIASV+ +              +N D++Y  ++E PTDMRPQ  DVLAFKTLSLNEETWTPELS YR A V AFD ++  V L P+             GG  GS A        +   V  + +G      +S +   ++P + G  E      ++G + PA    A+                             AG     P  D   K+     G+ G  ++       +E+   +EYS+LAN+R++RGPS+ EL+ RK A+ +W+SLGP
Sbjct:  474 LVPSGRGAGXXXXXXXXXXXGGQQH-----WGGPLGRIVGQLRR--PEGESESNGGGAAAATAPL-----EPEGRAGXXXXXXXV--GGVFGPGXXXXXXGMGMTRGGGFAGGRYADRNTRRHSTG----------HTANGD-----GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTE-----DDNKDGGGAGSGA--FVNDCTKGHTVGQQQQGSSSIIAESNTEEGSVPTSNGHNEGGFGGDSKGMEYPA----AVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAE-PTTDGRNKARSTSSGEVGGAEEDRELREGEEE---LEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGP 868          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 71.6 bits (174), Expect = 2.080e-11
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 0
Query:    8 SPLAALRRIRVIF-SEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVR 95
            +P A   R+R++F +++   R L    L + W+++PPEL+ + DLA H+A +  R R++  S ++L++DGFVLPP ES  + R+NDI+R
Sbjct:    3 TPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIR 90          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)

HSP 1 Score: 75.1 bits (183), Expect = 4.990e-10
Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:    8 SPLAALRRIRVIF-SEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLAQNKDTQ 106
            +P A   R+R++F +++   R L    L + W+++PPEL+ + DLA H+A +  R R++  S ++L++DGFVLPP ES  + R+NDI+R++  A  + TQ
Sbjct:    3 TPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 101          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.590e-10
Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:    8 SPLAALRRIRVIF-SEKTGCRPLTSPKLLKRWVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLAQNKDTQ 106
            +P A   R+R++F +++   R L    L + W+++PPEL+ + DLA H+A +  R R++  S ++L++DGFVLPP ES  + R+NDI+R++  A  + TQ
Sbjct:  135 TPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 233          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A6G1BQ98_9ORYZ (Coilin n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BQ98_9ORYZ)

HSP 1 Score: 72.4 bits (176), Expect = 3.320e-9
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:    8 SPLAALRRIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLAQNKDTQ 106
            +P A + R+R++F  +   R       L+R W+++PPELA + DLA H+A +  R R +    ++L++DGFVLPP ES  + R+NDI+R++     K TQ
Sbjct:    3 TPPAQVVRLRLVFDNQRLLRRSQRESGLRRCWLLLPPELATVADLAAHIAARF-RLRYSCPGCVILSIDGFVLPPFESTCIFRDNDIIRVKQKISKKITQ 101          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A3L6G677_MAIZE (Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G677_MAIZE)

HSP 1 Score: 65.5 bits (158), Expect = 6.960e-8
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   15 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 97
            R+R+IF      R +   + L+R W+++ PELA + +LA H+A +  R R+T    +VL++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLIFENSRLLRRVQRDEGLRRCWLLLSPELATVANLAAHVAARF-RLRRTCPRGVVLSMDGFTLPPFESTCIFRDNDIIRVK 95          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: UPI0019D6AB8C (coilin-like isoform X1 n=3 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6AB8C)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-7
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = 0
Query:   15 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 97
            R+R++F  +   R     + L+R W+++ PELA + DLA H+A +  R R+  +S ++L++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLVFENRRLLRRTERDEGLRRCWLLLRPELATVADLASHVAARF-RLRRFCSSGIILSMDGFALPPFESTCIFRDNDIIRVK 95          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A3L6GBK5_MAIZE (Coilin n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6GBK5_MAIZE)

HSP 1 Score: 63.5 bits (153), Expect = 3.120e-7
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   15 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 97
            R+R++F      + +   + L+R W+++ PEL  + DLA H+A +  R R+T    +VL++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLLFENSRLLQRVQRDEGLRRCWLLLSPELGTVADLAAHVAARF-RLRRTCPRGVVLSMDGFTLPPFESTCIFRDNDIIRVK 95          
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Match: A0A811QXN9_9POAL (Coilin n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QXN9_9POAL)

HSP 1 Score: 65.9 bits (159), Expect = 4.040e-7
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   15 RIRVIFSEKTGCRPLTSPKLLKR-WVMIPPELAVIGDLAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLE 97
            R+R++F      R +   + L+R W+++ PELA + DLA H+A +  R R+T    +VL++DGF LPP ES  + R+NDI+R++
Sbjct:   13 RLRLLFENSRLLRRVQRDEGLRRCWLLLSPELATVADLAAHVAARF-RLRRTCPWGVVLSMDGFTLPPFESTCIFRDNDIIRVK 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19735.5506.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FZW0_ECTSI4.700e-3833.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE2.990e-3134.17Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A0P0Y9A7_ORYSJ2.080e-1140.45Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
A0A0E0RG41_ORYRU4.990e-1039.00Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_O... [more]
B8BP67_ORYSI5.590e-1039.00Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP6... [more]
A0A6G1BQ98_9ORYZ3.320e-939.00Coilin n=1 Tax=Oryza meyeriana var. granulata TaxI... [more]
A0A3L6G677_MAIZE6.960e-840.48Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G67... [more]
UPI0019D6AB8C1.580e-739.29coilin-like isoform X1 n=3 Tax=Panicum virgatum Ta... [more]
A0A3L6GBK5_MAIZE3.120e-738.10Coilin n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6GBK... [more]
A0A811QXN9_9POAL4.040e-740.48Coilin n=1 Tax=Miscanthus lutarioriparius TaxID=42... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 15..156
e-value: 2.0E-13
score: 50.3
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 335..762
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 15..350
NoneNo IPR availablePANTHERPTHR15197:SF0COILINcoord: 335..762
coord: 15..350

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19735contigH-elongata_contig19735:2178..6032 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19735.5506.1mRNA_H-elongata_contig19735.5506.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19735 2027..6099 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19735.5506.1 ID=prot_H-elongata_contig19735.5506.1|Name=mRNA_H-elongata_contig19735.5506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1023bp
MDTSSQISPLAALRRIRVIFSEKTGCRPLTSPKLLKRWVMIPPELAVIGD
LAHHLARQLKRNRKTSASTLVLTLDGFVLPPTESLDLLRENDIVRLELLA
QNKDTQRCGDADRCGMNSSTNFTGKNRSGRRTPKQVTGSHRMNADVIQRE
TKKSKKRAGPLAISSVLSSKPGERKARLGSGKAGTSQNASNAISAKRRKI
ASSSPSDDVSGGPSGIRKGKTKTRHDPGIKIKARTTHAKSPADRTASETS
GGGIEAGSSRTTSAPTVAKKKKRKEKAPGGRAAAKTRDSSSSSKDTSSDE
NDSSSSDDEEPSSPVREESSYEEGSSAASPAQDASASKGAQKAKKNADER
VKPTEAKSPDEGSKRGSTRAMGGVDVSEPVSMSSTRGRRKSPKKPQSNDA
SGHHRGTGGDAGASASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTESS
SDSEDQEDAGSRHAQKKNTPLNMRAPATAAVASSACRGKEGRGGVASMSA
PPPAENQPTRSAGLAPMGRGAGKRGGGAQESKPRGWGGPLGRIVGQLQQS
GPVATSTSSVGESGTSIKDTCSGRGDSAGPDGVEACINRVERGGVFGPRG
GIGRGGMGMASAFGRPGRGFGHERRHSAGAGVKYADGRGSVDRGDRGSQG
GGGARKRGRGEWKKEYSVIASVDKEKEKNDDSKYACFQEFPTDMRPQAGD
VLAFKTLSLNEETWTPELSAYREATVAAFDPATDRVMLLPSGAPVVYNWQ
QRSGGGEPGSKAQETAETAAEHENVLVEVEGKGESSRQSPSSGNTLPINA
GRVEEAESARGKQTPADAGAAMGTVALPSGPEEGGKDLVAQVTVDHSSVS
AAGAGKPAPVDDDGAKSEGDRVGQTGSGDDSGSGDRVDEDPGWVEYSTLA
NLRLIRGPSVQELEARKNAMARWSSLGPPERVQKDSGCPALEIATVATPP
ALETHGGKEKPKRRVSGTKAAASPKNGGGKRKSKGKAGGTLAIGGLARIM
AEVSEKNIAQSIPSSSSGSVPT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031722Coilin_N
IPR024822Coilin