mRNA_H-elongata_contig197343.5505.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI) HSP 1 Score: 125 bits (315), Expect = 4.930e-32 Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 1
Query: 7 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
P+DYP+RVQPNQL+VDM+KEVVF PINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG
Sbjct: 521 PADYPRRVQPNQLFVDMEKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 581
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.130e-20 Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 16 YPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
YPK P+Q+ VDMD+EVV PINGQPVP SIHTIKNV P+PDNH YLRINFF G
Sbjct: 330 YPKDTMPHQIKVDMDREVVLCPINGQPVPFSIHTIKNVVMPEPDNHSFYLRINFFAPG 387
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S2H505_9STRA (FACT complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H505_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.230e-13 Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 13 DYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
+YP N+++VDMDKEVVF+P+NGQPVP I T+KNV P+ D YLRINF+ G
Sbjct: 81 EYPSGASMNRIFVDMDKEVVFLPVNGQPVPFHISTVKNVVMPEEDKAA-YLRINFYIPG 138
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S4A2J0_9STRA (FACT complex subunit (Fragment) n=8 Tax=cellular organisms TaxID=131567 RepID=A0A7S4A2J0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.070e-12 Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 1 QHPSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGTVRER 204
Q +YP+ + +++YVDM +V+F PING VP I IKN QPDPD YLR+NFFT G +
Sbjct: 524 QSAGEYPRDLPSSEVYVDMQGQVLFAPINGSQVPFHISMIKNAVQPDPDRTATYLRLNFFTPGQTASK 591
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S0ZHH3_9RHOD (FACT complex subunit (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHH3_9RHOD) HSP 1 Score: 66.2 bits (160), Expect = 2.360e-11 Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 7 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINF 177
PS YP ++P Q++VDMD EVVF+PING PVP + TIK+ + D +H Y+RINF
Sbjct: 8 PSKYPVSIRPRQMFVDMDAEVVFVPINGIPVPFHVSTIKSANKSDEGSHT-YVRINF 63
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: W7TT12_9STRA (FACT complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT12_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 3.340e-11 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 16 YPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
YP+ ++ NQ++VDM++E V +PI+G VP I TIKNV QP+PD YLRINF++ G
Sbjct: 593 YPRDMRANQVFVDMEREAVLLPIHGMHVPFHIATIKNVVQPEPDAAA-YLRINFYSPG 649
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: D8LVG5_BLAHO (FACT complex subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LVG5_BLAHO) HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8 Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 7 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFT 183
P+ YP ++ +Q+YVD + EV+F+PI+G PVP S+HT++ V+ + + Y RINF T
Sbjct: 343 PAQYPPEMRRDQIYVDTENEVLFLPIHGVPVPFSVHTVRTVSMTEEGGYG-YFRINFHT 400
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A196SDC4_BLAHN (FACT complex subunit n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SDC4_BLAHN) HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8 Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 10 SDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGT 192
+ YP ++ +Q++VD+D EV+F+PI+G PVP SIHTIK V+ + D Y R+NF + T
Sbjct: 535 AQYPPELKRDQIFVDVDHEVLFVPIHGLPVPFSIHTIKTVSMTE-DGGYGYFRVNFHSPQT 594
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A3D5JE00_9DELT (SPT16 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D5JE00_9DELT) HSP 1 Score: 51.6 bits (122), Expect = 2.240e-7 Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 37 NQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPD 147
+++Y+D++ + VF PING P+P I TIKNV QPDPD
Sbjct: 4 DEIYIDIEGQSVFAPINGIPIPFHISTIKNVVQPDPD 40 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197343.5505.1 >prot_H-elongata_contig197343.5505.1 ID=prot_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp QHPSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNback to top mRNA from alignment at H-elongata_contig197343:563..769- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197343.5505.1 ID=mRNA_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig197343:563..769- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197343:563..769- >mRNA_H-elongata_contig197343.5505.1 ID=mRNA_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig197343:563..769- (Himanthalia elongata Himel1 dioecious)back to top |