mRNA_H-elongata_contig197343.5505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197343.5505.1
Unique NamemRNA_H-elongata_contig197343.5505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.930e-32
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 1
Query:    7 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
            P+DYP+RVQPNQL+VDM+KEVVF PINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG
Sbjct:  521 PADYPRRVQPNQLFVDMEKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 581          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.130e-20
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   16 YPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
            YPK   P+Q+ VDMD+EVV  PINGQPVP SIHTIKNV  P+PDNH  YLRINFF  G
Sbjct:  330 YPKDTMPHQIKVDMDREVVLCPINGQPVPFSIHTIKNVVMPEPDNHSFYLRINFFAPG 387          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S2H505_9STRA (FACT complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H505_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.230e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   13 DYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
            +YP     N+++VDMDKEVVF+P+NGQPVP  I T+KNV  P+ D    YLRINF+  G
Sbjct:   81 EYPSGASMNRIFVDMDKEVVFLPVNGQPVPFHISTVKNVVMPEEDKAA-YLRINFYIPG 138          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S4A2J0_9STRA (FACT complex subunit (Fragment) n=8 Tax=cellular organisms TaxID=131567 RepID=A0A7S4A2J0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.070e-12
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 QHPSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGTVRER 204
            Q   +YP+ +  +++YVDM  +V+F PING  VP  I  IKN  QPDPD    YLR+NFFT G    +
Sbjct:  524 QSAGEYPRDLPSSEVYVDMQGQVLFAPINGSQVPFHISMIKNAVQPDPDRTATYLRLNFFTPGQTASK 591          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S0ZHH3_9RHOD (FACT complex subunit (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHH3_9RHOD)

HSP 1 Score: 66.2 bits (160), Expect = 2.360e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINF 177
            PS YP  ++P Q++VDMD EVVF+PING PVP  + TIK+  + D  +H  Y+RINF
Sbjct:    8 PSKYPVSIRPRQMFVDMDAEVVFVPINGIPVPFHVSTIKSANKSDEGSHT-YVRINF 63          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: W7TT12_9STRA (FACT complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT12_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.340e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   16 YPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 189
            YP+ ++ NQ++VDM++E V +PI+G  VP  I TIKNV QP+PD    YLRINF++ G
Sbjct:  593 YPRDMRANQVFVDMEREAVLLPIHGMHVPFHIATIKNVVQPEPDAAA-YLRINFYSPG 649          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: D8LVG5_BLAHO (FACT complex subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LVG5_BLAHO)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    7 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFT 183
            P+ YP  ++ +Q+YVD + EV+F+PI+G PVP S+HT++ V+  +   +  Y RINF T
Sbjct:  343 PAQYPPEMRRDQIYVDTENEVLFLPIHGVPVPFSVHTVRTVSMTEEGGYG-YFRINFHT 400          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A196SDC4_BLAHN (FACT complex subunit n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SDC4_BLAHN)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   10 SDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGT 192
            + YP  ++ +Q++VD+D EV+F+PI+G PVP SIHTIK V+  + D    Y R+NF +  T
Sbjct:  535 AQYPPELKRDQIFVDVDHEVLFVPIHGLPVPFSIHTIKTVSMTE-DGGYGYFRVNFHSPQT 594          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A3D5JE00_9DELT (SPT16 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D5JE00_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 2.240e-7
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   37 NQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPD 147
            +++Y+D++ + VF PING P+P  I TIKNV QPDPD
Sbjct:    4 DEIYIDIEGQSVFAPINGIPIPFHISTIKNVVQPDPD 40          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FPY1_ECTSI4.930e-3291.80FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA7.130e-2070.69FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2H505_9STRA2.230e-1355.93FACT complex subunit n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4A2J0_9STRA1.070e-1247.06FACT complex subunit (Fragment) n=8 Tax=cellular o... [more]
A0A7S0ZHH3_9RHOD2.360e-1154.39FACT complex subunit (Fragment) n=1 Tax=Timspurcki... [more]
W7TT12_9STRA3.340e-1153.45FACT complex subunit n=2 Tax=Monodopsidaceae TaxID... [more]
D8LVG5_BLAHO1.260e-844.07FACT complex subunit n=1 Tax=Blastocystis hominis ... [more]
A0A196SDC4_BLAHN1.260e-845.90FACT complex subunit n=1 Tax=Blastocystis sp. subt... [more]
A0A3D5JE00_9DELT2.240e-756.76SPT16 domain-containing protein n=1 Tax=Deltaprote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197343contigH-elongata_contig197343:563..769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.2e-27
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.0476-CDS-H-elongata_contig197343:562..7691622930116.0476-CDS-H-elongata_contig197343:562..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197343 563..769 -
1691679286.6590497-CDS-H-elongata_contig197343:562..7691691679286.6590497-CDS-H-elongata_contig197343:562..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197343 563..769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197343.5505.1prot_H-elongata_contig197343.5505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197343 563..769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197343.5505.1

>prot_H-elongata_contig197343.5505.1 ID=prot_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
QHPSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDN
HCHYLRINFFTSGTVRER*
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mRNA from alignment at H-elongata_contig197343:563..769-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197343.5505.1 ID=mRNA_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig197343:563..769- (Himanthalia elongata Himel1 dioecious)
CAGCACCCTTCCGATTACCCAAAGCGGGTGCAGCCGAACCAGCTGTACGT GGACATGGACAAGGAGGTTGTGTTCATGCCGATCAACGGGCAACCCGTGC CCCTGTCGATTCACACTATCAAGAACGTGACGCAGCCAGACCCCGACAAC CACTGCCACTATCTGAGGATCAACTTCTTCACGTCTGGGACGGTAAGAGA GAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig197343:563..769-

>mRNA_H-elongata_contig197343.5505.1 ID=mRNA_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig197343:563..769- (Himanthalia elongata Himel1 dioecious)
CAGCACCCTTCCGATTACCCAAAGCGGGTGCAGCCGAACCAGCTGTACGT
GGACATGGACAAGGAGGTTGTGTTCATGCCGATCAACGGGCAACCCGTGC
CCCTGTCGATTCACACTATCAAGAACGTGACGCAGCCAGACCCCGACAAC
CACTGCCACTATCTGAGGATCAACTTCTTCACGTCTGGGACGGTAAGAGA
GAGATAGCAGCACCCTTCCGATTACCCAAAGCGGGTGCAGCCGAACCAGC
TGTACGTGGACATGGACAAGGAGGTTGTGTTCATGCCGATCAACGGGCAA
CCCGTGCCCCTGTCGATTCACACTATCAAGAACGTGACGCAGCCAGACCC
CGACAACCACTGCCACTATCTGAGGATCAACTTCTTCACGTCTGGGACGG
TAAGAGAGAGATAG
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