mRNA_H-elongata_contig197218.5503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197218.5503.1
Unique NamemRNA_H-elongata_contig197218.5503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197218.5503.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.730e-5
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 MCSGDGCSKYPSYGKAGSKKREYCAKHAMDGMINVHNK 117
             C  + C+K P+YG AGSKKRE+C++HA DGM+NV+NK
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
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BLAST of mRNA_H-elongata_contig197218.5503.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.720e-5
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 MCSGDGCSKYPSYGKAGSKKREYCAKHAMDGMINVHNK 117
             C    C+K P+YG AGSKKRE+C++HA DGM+NV+NK
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197218.5503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE2.730e-560.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI6.720e-560.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197218contigH-elongata_contig197218:7..1116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1110
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197218.5503.1prot_H-elongata_contig197218.5503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197218 10..849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.9221585-UTR-H-elongata_contig197218:6..91622930115.9221585-UTR-H-elongata_contig197218:6..9Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197218 7..9 +
1691679286.6108341-UTR-H-elongata_contig197218:6..91691679286.6108341-UTR-H-elongata_contig197218:6..9Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197218 7..9 +
1622930115.9604354-UTR-H-elongata_contig197218:849..11161622930115.9604354-UTR-H-elongata_contig197218:849..1116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197218 850..1116 +
1691679286.632499-UTR-H-elongata_contig197218:849..11161691679286.632499-UTR-H-elongata_contig197218:849..1116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig197218 850..1116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.940415-CDS-H-elongata_contig197218:9..8491622930115.940415-CDS-H-elongata_contig197218:9..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197218 10..849 +
1691679286.6214514-CDS-H-elongata_contig197218:9..8491691679286.6214514-CDS-H-elongata_contig197218:9..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197218 10..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197218.5503.1

>prot_H-elongata_contig197218.5503.1 ID=prot_H-elongata_contig197218.5503.1|Name=mRNA_H-elongata_contig197218.5503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MCSGDGCSKYPSYGKAGSKKREYCAKHAMDGMINVHNKMCAGDGCSKYPS
YRQAGSTKREYCAKHALEGIINVDKRKICGGDGCSKHPNYGKAETTKREY
CAKHALKGMVSFTSLMSANDSFSQVPANGKAGSTIREYCAEHASEGMVNV
LTKNGAGDKLSKHDRKAESTKREYCAELAFEGTINLTTGEMCAGDTCFKV
PNYGNAGSTKREQCAEHALEGIVNVPHKRPSLKKRVSKISSSPVSMSKRC
KTNNNAGAPFPGTALDVVSVKSEVSVKPK*
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mRNA from alignment at H-elongata_contig197218:7..1116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197218.5503.1 ID=mRNA_H-elongata_contig197218.5503.1|Name=mRNA_H-elongata_contig197218.5503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1110bp|location=Sequence derived from alignment at H-elongata_contig197218:7..1116+ (Himanthalia elongata Himel1 dioecious)
AAAATGTGTTCTGGTGATGGATGTTCTAAGTACCCAAGCTACGGAAAGGC
TGGCAGCAAGAAACGGGAGTACTGCGCTAAGCATGCCATGGATGGGATGA
TTAACGTTCATAATAAAATGTGTGCCGGTGATGGATGTTCTAAGTACCCA
AGCTACAGACAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAGCATGC
CTTGGAGGGGATAATTAACGTCGATAAGAGGAAAATATGTGGTGGCGATG
GATGTTCTAAGCACCCAAACTACGGAAAAGCCGAAACCACGAAGCGAGAG
TACTGCGCTAAGCATGCCTTGAAGGGGATGGTCAGTTTTACAAGCCTTAT
GTCTGCCAACGATAGTTTCTCTCAGGTACCAGCTAACGGTAAGGCTGGCA
GCACGATACGGGAGTACTGCGCTGAACATGCCTCGGAGGGGATGGTCAAT
GTTTTGACCAAAAATGGTGCCGGTGATAAATTATCTAAGCATGACAGAAA
GGCCGAAAGCACAAAGAGAGAATACTGCGCTGAACTTGCGTTCGAGGGGA
CAATTAATCTTACTACGGGGGAAATGTGTGCAGGCGATACATGTTTTAAG
GTACCAAATTACGGCAACGCTGGCAGCACGAAACGGGAGCAATGCGCTGA
GCATGCCTTAGAAGGAATTGTCAATGTTCCTCACAAGCGTCCAAGTTTAA
AGAAGCGGGTGTCGAAGATCTCATCATCACCAGTGTCCATGTCGAAAAGA
TGTAAAACCAACAATAACGCTGGAGCCCCTTTTCCTGGTACTGCATTAGA
TGTTGTTTCGGTTAAGTCAGAGGTATCAGTAAAACCCAAGTAGGTATATA
TTTTAAGGATTTAGTAGACGGTCTACTAGCGAATGAGAGCGGTGGCTTCG
CGCTCGGTCGATTTCATGCCTTAAGATATTACATCGTGGGTATGTTCAGC
TGACCACAGGCAGAAAGCGAAAAAATCCGCTTGATCCTTAATCTGCTATA
TTTTATATAACCAGACACATATTTGGAGCCCGAACAAATATTGTTCTTGA
TATTGGTTGAACGAGAAGGAGCTTGATGTATATGTCAGAGCATTGCAAAG
AGCAGCGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig197218:7..1116+

>mRNA_H-elongata_contig197218.5503.1 ID=mRNA_H-elongata_contig197218.5503.1|Name=mRNA_H-elongata_contig197218.5503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig197218:7..1116+ (Himanthalia elongata Himel1 dioecious)
ATGTGTTCTGGTGATGGATGTTCTAAGTACCCAAGCTACGGAAAGGCTGG
CAGCAAGAAACGGGAGTACTGCGCTAAGCATGCCATGGATGGGATGATTA
ACGTTCATAATAAAATGTGTGCCGGTGATGGATGTTCTAAGTACCCAAGC
TACAGACAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAGCATGCCTT
GGAGGGGATAATTAACGTCGATAAGAGGAAAATATGTGGTGGCGATGGAT
GTTCTAAGCACCCAAACTACGGAAAAGCCGAAACCACGAAGCGAGAGTAC
TGCGCTAAGCATGCCTTGAAGGGGATGGTCAGTTTTACAAGCCTTATGTC
TGCCAACGATAGTTTCTCTCAGGTACCAGCTAACGGTAAGGCTGGCAGCA
CGATACGGGAGTACTGCGCTGAACATGCCTCGGAGGGGATGGTCAATGTT
TTGACCAAAAATGGTGCCGGTGATAAATTATCTAAGCATGACAGAAAGGC
CGAAAGCACAAAGAGAGAATACTGCGCTGAACTTGCGTTCGAGGGGACAA
TTAATCTTACTACGGGGGAAATGTGTGCAGGCGATACATGTTTTAAGGTA
CCAAATTACGGCAACGCTGGCAGCACGAAACGGGAGCAATGCGCTGAGCA
TGCCTTAGAAGGAATTGTCAATGTTCCTCACAAGCGTCCAAGTTTAAAGA
AGCGGGTGTCGAAGATCTCATCATCACCAGTGTCCATGTCGAAAAGATGT
AAAACCAACAATAACGCTGGAGCCCCTTTTCCTGGTACTGCATTAGATGT
TGTTTCGGTTAAGTCAGAGGTATCAGTAAAACCCAAGTAGATGTGTTCTG
GTGATGGATGTTCTAAGTACCCAAGCTACGGAAAGGCTGGCAGCAAGAAA
CGGGAGTACTGCGCTAAGCATGCCATGGATGGGATGATTAACGTTCATAA
TAAAATGTGTGCCGGTGATGGATGTTCTAAGTACCCAAGCTACAGACAGG
CTGGCAGCACGAAACGGGAGTACTGCGCTAAGCATGCCTTGGAGGGGATA
ATTAACGTCGATAAGAGGAAAATATGTGGTGGCGATGGATGTTCTAAGCA
CCCAAACTACGGAAAAGCCGAAACCACGAAGCGAGAGTACTGCGCTAAGC
ATGCCTTGAAGGGGATGGTCAGTTTTACAAGCCTTATGTCTGCCAACGAT
AGTTTCTCTCAGGTACCAGCTAACGGTAAGGCTGGCAGCACGATACGGGA
GTACTGCGCTGAACATGCCTCGGAGGGGATGGTCAATGTTTTGACCAAAA
ATGGTGCCGGTGATAAATTATCTAAGCATGACAGAAAGGCCGAAAGCACA
AAGAGAGAATACTGCGCTGAACTTGCGTTCGAGGGGACAATTAATCTTAC
TACGGGGGAAATGTGTGCAGGCGATACATGTTTTAAGGTACCAAATTACG
GCAACGCTGGCAGCACGAAACGGGAGCAATGCGCTGAGCATGCCTTAGAA
GGAATTGTCAATGTTCCTCACAAGCGTCCAAGTTTAAAGAAGCGGGTGTC
GAAGATCTCATCATCACCAGTGTCCATGTCGAAAAGATGTAAAACCAACA
ATAACGCTGGAGCCCCTTTTCCTGGTACTGCATTAGATGTTGTTTCGGTT
AAGTCAGAGGTATCAGTAAAACCCAAGTAG
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