mRNA_H-elongata_contig19678.5487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19678.5487.1
Unique NamemRNA_H-elongata_contig19678.5487.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A4DAE2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DAE2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.610e-24
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPT-LLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 444
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +         E    L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK  GI   G
Sbjct:   46 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPPEPAVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 189
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.840e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    4 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 435
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:  137 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGIT 273
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A4BDE5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BDE5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.000e-24
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSN-ISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 444
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +     ++ +     L KADE +  E+K +++  PYR  VG+ M+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK  GI   G
Sbjct:   16 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAEPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSRMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 159
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.510e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    4 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 435
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:   78 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGIT 214
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.090e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    4 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 435
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:  311 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGIT 447
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.130e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSN-ISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 444
            A + +KF++KDMG AR+ +G  I  + + R L I Q  Y ESI+ KFG +     ++ +     L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K++ YLL TK  GI   G
Sbjct:   64 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDG 207
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A3YEB8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YEB8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.610e-24
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPT-LLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 444
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +         E    L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK  GI   G
Sbjct:   16 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPPEPAVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 159
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.710e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    4 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 435
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:  832 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGIT 968
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.920e-24
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    4 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 435
            D+F  +L    ++K++GD  ++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  +K  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:   36 DQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGMKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGIT 172
[Close]
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A4CX45_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CX45_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.400e-24
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 1 
Query:   16 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSN-ISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTK 420
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +     ++ +     L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK
Sbjct:   16 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTK 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4DAE2_9STRA1.610e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.840e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4BDE5_9STRA2.000e-2439.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0Z9_9PHAE2.510e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.090e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GCN4_9STRA4.130e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YEB8_9STRA4.610e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE4.710e-2440.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KR24_9PHAE6.920e-2439.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4CX45_9STRA7.400e-2440.44Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19678contigH-elongata_contig19678:2403..2849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue6.2e-20
Seed eggNOG ortholog164328.Phyra71619
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930114.3336632-CDS-H-elongata_contig19678:2402..28491622930114.3336632-CDS-H-elongata_contig19678:2402..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19678 2403..2849 -
1691679286.079321-CDS-H-elongata_contig19678:2402..28491691679286.079321-CDS-H-elongata_contig19678:2402..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19678 2403..2849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19678.5487.1prot_H-elongata_contig19678.5487.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19678 2403..2849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19678.5487.1

>prot_H-elongata_contig19678.5487.1 ID=prot_H-elongata_contig19678.5487.1|Name=mRNA_H-elongata_contig19678.5487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
IDRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVG
KFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTA
TMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG*
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mRNA from alignment at H-elongata_contig19678:2403..2849-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19678.5487.1 ID=mRNA_H-elongata_contig19678.5487.1|Name=mRNA_H-elongata_contig19678.5487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig19678:2403..2849- (Himanthalia elongata Himel1 dioecious)
ATTGATAGATTCGCGGCTGAGCTTAGACAAAAGTTCAAATTGAAGGACAT
GGGCGACGCCAGGTATCACATGGGCTGTCACATTACTAGGAACCGCAAGG
CGCGTGAGCTGAAGATCGGCCAACACTGGTACGTGGAGTCAATAGTGGGA
AAGTTTGGCGTCAAGAAGGGAAGCAATATATCGGCTGTATCGGAGGTACC
AACCCTCTTAAAGGCGGACGAGTCACGGAACCCGGAGGAAAAGGAGGAAA
TAAGGAAGTTTCCATACCGGGAGGCAGTGGGGGCGCTTATGTGGACGGCG
ACGATGACACGACCGGATATTGCGAGCGCAGTACGTGCTGTGGCCAGGTT
CTGCAAAAACTCTGGGTCGGCGCATAAGCAGGCACTGATGAAGATCATGC
AGTATCTCCTTCACACGAAGGGTTGGGGGATTACATGCGGTGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig19678:2403..2849-

>mRNA_H-elongata_contig19678.5487.1 ID=mRNA_H-elongata_contig19678.5487.1|Name=mRNA_H-elongata_contig19678.5487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig19678:2403..2849- (Himanthalia elongata Himel1 dioecious)
ATTGATAGATTCGCGGCTGAGCTTAGACAAAAGTTCAAATTGAAGGACAT
GGGCGACGCCAGGTATCACATGGGCTGTCACATTACTAGGAACCGCAAGG
CGCGTGAGCTGAAGATCGGCCAACACTGGTACGTGGAGTCAATAGTGGGA
AAGTTTGGCGTCAAGAAGGGAAGCAATATATCGGCTGTATCGGAGGTACC
AACCCTCTTAAAGGCGGACGAGTCACGGAACCCGGAGGAAAAGGAGGAAA
TAAGGAAGTTTCCATACCGGGAGGCAGTGGGGGCGCTTATGTGGACGGCG
ACGATGACACGACCGGATATTGCGAGCGCAGTACGTGCTGTGGCCAGGTT
CTGCAAAAACTCTGGGTCGGCGCATAAGCAGGCACTGATGAAGATCATGC
AGTATCTCCTTCACACGAAGGGTTGGGGGATTACATGCGGTGGGTAGATT
GATAGATTCGCGGCTGAGCTTAGACAAAAGTTCAAATTGAAGGACATGGG
CGACGCCAGGTATCACATGGGCTGTCACATTACTAGGAACCGCAAGGCGC
GTGAGCTGAAGATCGGCCAACACTGGTACGTGGAGTCAATAGTGGGAAAG
TTTGGCGTCAAGAAGGGAAGCAATATATCGGCTGTATCGGAGGTACCAAC
CCTCTTAAAGGCGGACGAGTCACGGAACCCGGAGGAAAAGGAGGAAATAA
GGAAGTTTCCATACCGGGAGGCAGTGGGGGCGCTTATGTGGACGGCGACG
ATGACACGACCGGATATTGCGAGCGCAGTACGTGCTGTGGCCAGGTTCTG
CAAAAACTCTGGGTCGGCGCATAAGCAGGCACTGATGAAGATCATGCAGT
ATCTCCTTCACACGAAGGGTTGGGGGATTACATGCGGTGGGTAG
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